Non-Coding RNA Search

Ss1.1-Mixn-0019d14.5

Sequence:


               
               AGTCCAGCCGTCTCCACAAGCCCCCCTCGGTCACTGCCCCCCAGCCATCCGTCCATCTGT
ACAGTCGTAAGCCCTTCTCAGTCAGCCCCATCCCATCCTGGGCTTTGACGAGGCCCCAGG
TCTTTGAAGAGATTCTGACACTGGATGTGGTCCCCCTTCTCTCCTAGGTGTGCCCAGCTG
TCCCTCACCCATTCTTCCCTGTGGGCACATTTGCCATCCATCCGGGGTTCACGCTCCCCT
CCCCCAGGCAGCACTGCCCGGTCAGAGAGCTGGGAGGAAGCTCACAAATGGTTAATTTAA
GGCTGCATCACGAACGGTACAGAGACAAGCGTGCACACACGTCACACAGACACTTCAAAT
GGTTTCCTCTGTATCAGTTAGTTGCGTGCTGGGATGTTCCCTGAACCAGAACTAGAAGGA
AAGCTGACCTTTCCCACGTGGCCCTGACCGCTCTGGGCCTGGTCCCTCCTTTGGGTGCTG
CGCCTGTGGCTACTGGGTCCCCATTCCCAGAACACCCTGTTCCCTGCCTGCTTGGGGGTT
GCATGGGGGCAGGGCGAATGCCTTGGGGGGGCAAAGTGCTTTAGAAATAGCACCTTCTTT
ATTGAGAGCATGTTAAACGTTCATTGAGGAAAAGGCTTTGCAGCCAAAGAATAGTCGAGC
CAGGAGGGCCTGGGCACCCTATGGGGGCGGGGGGACAGTGTTCTTGCCACCCCCACTGCT
CCCAGGGTGGCCTTGAGAAGGAAGAGGCAAGACTGGATGGAACCCGGGGTGGGGACCAGC
CCAGTCCTCTCCCTTTGGCGCAGGGCCTGGGGGAGGCAGAGCGTTGCAAAGGGCGTGTTC
TGGGTGCAGGAGGAGCTATGGTTAGGCCCCCACCTACCTGTGCAGGAGTGGGGAGCAACC
CGGGCCTCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCCAGCCGTCTCCACAAGCCCCCCTCGGTCACTGCCCCCCAGCCATCCGTCCATCTGT
ACAGTCGTAAGCCCTTCTCAGTCAGCCCCATCCCATCCTGGGCTTTGACGAGGCCCCAGG
TCTTTGAAGAGATTCTGACACTGGATGTGGTCCCCCTTCTCTCCTAGGTGTGCCCAGCTG
TCCCTCACCCATTCTTCCCTGTGGGCACATTTGCCATCCATCCGGGGTTCACGCTCCCCT
CCCCCAGGCAGCACTGCCCGGTCAGAGAGCTGGGAGGAAGCTCACAAATGGTTAATTTAA
GGCTGCATCACGAACGGTACAGAGACAAGCGTGCACACACGTCACACAGACACTTCAAAT
GGTTTCCTCTGTATCAGTTAGTTGCGTGCTGGGATGTTCCCTGAACCAGAACTAGAAGGA
AAGCTGACCTTTCCCACGTGGCCCTGACCGCTCTGGGCCTGGTCCCTCCTTTGGGTGCTG
CGCCTGTGGCTACTGGGTCCCCATTCCCAGAACACCCTGTTCCCTGCCTGCTTGGGGGTT
GCATGGGGGCAGGGCGAATGCCTTGGGGGGGCAAAGTGCTTTAGAAATAGCACCTTCTTT
ATTGAGAGCATGTTAAACGTTCATTGAGGAAAAGGCTTTGCAGCCAAAGAATAGTCGAGC
CAGGAGGGCCTGGGCACCCTATGGGGGCGGGGGGACAGTGTTCTTGCCACCCCCACTGCT
CCCAGGGTGGCCTTGAGAAGGAAGAGGCAAGACTGGATGGAACCCGGGGTGGGGACCAGC
CCAGTCCTCTCCCTTTGGCGCAGGGCCTGGGGGAGGCAGAGCGTTGCAAAGGGCGTGTTC
TGGGTGCAGGAGGAGCTATGGTTAGGCCCCCACCTACCTGTGCAGGAGTGGGGAGCAACC
CGGGCCTCTTTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               142-295, - strand, RNAz p=0.830353
               

               
               703-816, - strand, RNAz p=0.872162

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-295, - strand, RNAz p=0.830353
               

               
               703-816, - strand, RNAz p=0.872162

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               811-962, + strand, RNAmicro p=0.99785

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               811-962, + strand, RNAmicro p=0.99785

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-912, gnl|bosTau2|chr25 (35183058-35182152)
               

               
               1-912, gnl|Hg17|chr7 (98090194-98088927)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr25 (35183058-35182152)
               

               
               1-912, gnl|Hg17|chr7 (98090194-98088927)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fhi (0.169578)

	142-295, - strand, RNAz p=0.830353
	703-816, - strand, RNAz p=0.872162

	1-912, gnl\|bosTau2\|chr25 (35183058-35182152)
	1-912, gnl\|Hg17\|chr7 (98090194-98088927)

	fbs (0.350693)
	hyp (0.285673)
	ebs (0.236602)
	ece (0.229305)
	fhi (0.169578)