Non-Coding RNA Search

Ss1.1-Mixn-0019e23.5

Sequence:


               
               ACGGTTTGGGGCCCTGACAGCTGAGAAGCTCCGGTCTGTTGTCACACCCGCCAGGGTCCA
GTTCAAGACTTACCCAGGTGTCATGCACAGCTCCTGTCCTCAGGAGATGGCAGCTGTGAA
GGAGTTTCTTGAGAAGCTGCTGCCTCCTGTCTAACAAGAGTGGCTGGCCCCCGGCGCAGT
CCCCCGGCCCACGGAGGACTCCGCACCCGAGGCACCATCTTGGATCTGAGCCGGTCGAGC
CCCTCTCACCCTCCTGGACCCATCCTTTTCCCACAGGCCTCTGGGGCAGGCAGGCCAAGG
GAGGCCCTCTTTCCAGGCTTCGGCCACCTGGCTGGCTGCCTCTGGGGGTGGGCTGCTTTC
TTACCTGTTTCCCCGGAGGTGGGGCCCCCCGGCAGCAGTATTGAAGGGGCTGTAAGCAGC
GGGAGAAAGGGGCCCAGCCGCTGACCCACTCACTCAGGACCTCACTCACTAGCCCCGCTT
TGGGCCCCCTCCTGTGACCTCAGGGTTTGGCCCATGGGGCCCTCCCAGGCCCCACCTCCC
ACCCCCTCCCCACAACTGATATTCTGCCCAGATAATCGTGTCTCCTTCCTCCACTCCAGC
TGCTTCTCAATCATGAATGTGTCTGTGGCCCAGGCCCCCTTGCTGCTGTGCTCCCTGCCC
CTGCGCAGGGGTGTTGCTGAGGGGGTGGAGGCCTTTGAGGGGCCTCCCCTCAGCCATTTA
TTGACTTGGGGGCTGGGCCCTGCCTCCCCATTACCCTCCCCCCAGGCCTGGAGCCTGCAG
GGCTGGACTGAGGCTCAAGGTCGCCCGCAGCTGTCCCACCCCACGTCGCCCCCATGCTGG
GGCCCGGGGAGAGGTGGGGAGGACTTGTGTCTTGTCTTCTGTCTCCATGTAGTTTTGGGT
GTTTTTCTTGTTGTGTCCTGGATTCCGATATAAAATTAAAGAAATGGCTTCACAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGTTTGGGGCCCTGACAGCTGAGAAGCTCCGGTCTGTTGTCACACCCGCCAGGGTCCA
GTTCAAGACTTACCCAGGTGTCATGCACAGCTCCTGTCCTCAGGAGATGGCAGCTGTGAA
GGAGTTTCTTGAGAAGCTGCTGCCTCCTGTCTAACAAGAGTGGCTGGCCCCCGGCGCAGT
CCCCCGGCCCACGGAGGACTCCGCACCCGAGGCACCATCTTGGATCTGAGCCGGTCGAGC
CCCTCTCACCCTCCTGGACCCATCCTTTTCCCACAGGCCTCTGGGGCAGGCAGGCCAAGG
GAGGCCCTCTTTCCAGGCTTCGGCCACCTGGCTGGCTGCCTCTGGGGGTGGGCTGCTTTC
TTACCTGTTTCCCCGGAGGTGGGGCCCCCCGGCAGCAGTATTGAAGGGGCTGTAAGCAGC
GGGAGAAAGGGGCCCAGCCGCTGACCCACTCACTCAGGACCTCACTCACTAGCCCCGCTT
TGGGCCCCCTCCTGTGACCTCAGGGTTTGGCCCATGGGGCCCTCCCAGGCCCCACCTCCC
ACCCCCTCCCCACAACTGATATTCTGCCCAGATAATCGTGTCTCCTTCCTCCACTCCAGC
TGCTTCTCAATCATGAATGTGTCTGTGGCCCAGGCCCCCTTGCTGCTGTGCTCCCTGCCC
CTGCGCAGGGGTGTTGCTGAGGGGGTGGAGGCCTTTGAGGGGCCTCCCCTCAGCCATTTA
TTGACTTGGGGGCTGGGCCCTGCCTCCCCATTACCCTCCCCCCAGGCCTGGAGCCTGCAG
GGCTGGACTGAGGCTCAAGGTCGCCCGCAGCTGTCCCACCCCACGTCGCCCCCATGCTGG
GGCCCGGGGAGAGGTGGGGAGGACTTGTGTCTTGTCTTCTGTCTCCATGTAGTTTTGGGT
GTTTTTCTTGTTGTGTCCTGGATTCCGATATAAAATTAAAGAAATGGCTTCACAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               98-210, - strand, RNAz p=0.943423
               

               
               248-390, - strand, RNAz p=0.970636
               

               
               431-588, - strand, RNAz p=0.995239
               

               
               629-809, - strand, RNAz p=0.996814

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-210, - strand, RNAz p=0.943423
               

               
               248-390, - strand, RNAz p=0.970636
               

               
               431-588, - strand, RNAz p=0.995239
               

               
               629-809, - strand, RNAz p=0.996814

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               281-404, + strand, RNAmicro p=0.999974
               

               
               754-962, - strand, RNAmicro p=0.985281
               

               
               764-849, + strand, RNAmicro p=0.97145

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               281-404, + strand, RNAmicro p=0.999974
               

               
               754-962, - strand, RNAmicro p=0.985281
               

               
               764-849, + strand, RNAmicro p=0.97145

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               98-952, gnl|bosTau2|chr2 (82403734-82402858)
               

               
               98-952, gnl|Hg17|chr1 (23866472-23867334)
               

               
               98-952, gnl|Mm7|chr4 (135347510-135346668)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-952, gnl|bosTau2|chr2 (82403734-82402858)
               

               
               98-952, gnl|Hg17|chr1 (23866472-23867334)
               

               
               98-952, gnl|Mm7|chr4 (135347510-135346668)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               mas (0.210305)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	98-210, - strand, RNAz p=0.943423
	248-390, - strand, RNAz p=0.970636
	431-588, - strand, RNAz p=0.995239
	629-809, - strand, RNAz p=0.996814

	281-404, + strand, RNAmicro p=0.999974
	754-962, - strand, RNAmicro p=0.985281
	764-849, + strand, RNAmicro p=0.97145

	98-952, gnl\|bosTau2\|chr2 (82403734-82402858)
	98-952, gnl\|Hg17\|chr1 (23866472-23867334)
	98-952, gnl\|Mm7\|chr4 (135347510-135346668)

	mas (0.210305)
	ton (0.1755)
	csp (0.161186)
	lnt (0.142308)
	eru (0.120048)
	med (0.116252)
	jej (0.0989218)
	eje (0.0988338)