Non-Coding RNA Search

Ss1.1-Mixn-0019f07.5

Sequence:


               
               GGGGTTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCACCACACCCCCCAATCACTGAT
CCTTCTACACCTCCCTTCCAAAGACCACCATGTTTCTCTGCTTCCAAAGACCCTTCCTCA
AAGTCCCATACAACTGCAGTCTTGGCTGAAAAGGCTCCCCCTCCACCACTGGGAGGAATG
GGGGAGGAGCCCTGTTTGACCCAGTGCACTGCCAGCCCTTGGGCAAGAAAGTTCCCTTTC
CGTAGGCCTCACTTTCTTCATCTGTACTGTGGGTGTACTATGGTATGCAGAAGGGGTAAT
TCAGTTTGGATTTCCCCATTTTAGTTTAGACACTTAGTCTGTTTGTCTACCTTCATGTCT
CTCGCTGAGCCCTCTTATTCCTCTTTGCCATCCCCAGATATGTCACCCCTCCTCATTCAC
AAAGTGCCCCCCTTCATGTCCCTGGCCCCTTGGAATATCCTCTTGGCACTCTGGACAGCG
ATTCTGTGTCTGACCCAGACGGTGCCTGCAGAGTGCCCTGGGAAGGGAAGAGGAGCACTG
ACTTTGGGGTTTTGAGGGTCAAGTAGGAGTTGGTAATACCTGGAGAGACTCTTTCACCTC
CATCCCTGGACAGTTATGGAGGTCGAAGAGGGGAAGGAAGATGGCTTCTATCACGTGGCA
CCCCCTGTGAGAGGGAGTAGGGGGAGCTCAGGATGACCCTCAGCTGTTCCAATCCAGTAT
TTTTTTCTTTTTTAAAAAATTACTGTATTTATTATGACGATGGTGACTCCCCAGTGCACA
GGGGGGCCAGAATCTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTTACATAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTTTGCTTGGGCTCCCCCTTCATGGCCTCTGCACCACCACACCCCCCAATCACTGAT
CCTTCTACACCTCCCTTCCAAAGACCACCATGTTTCTCTGCTTCCAAAGACCCTTCCTCA
AAGTCCCATACAACTGCAGTCTTGGCTGAAAAGGCTCCCCCTCCACCACTGGGAGGAATG
GGGGAGGAGCCCTGTTTGACCCAGTGCACTGCCAGCCCTTGGGCAAGAAAGTTCCCTTTC
CGTAGGCCTCACTTTCTTCATCTGTACTGTGGGTGTACTATGGTATGCAGAAGGGGTAAT
TCAGTTTGGATTTCCCCATTTTAGTTTAGACACTTAGTCTGTTTGTCTACCTTCATGTCT
CTCGCTGAGCCCTCTTATTCCTCTTTGCCATCCCCAGATATGTCACCCCTCCTCATTCAC
AAAGTGCCCCCCTTCATGTCCCTGGCCCCTTGGAATATCCTCTTGGCACTCTGGACAGCG
ATTCTGTGTCTGACCCAGACGGTGCCTGCAGAGTGCCCTGGGAAGGGAAGAGGAGCACTG
ACTTTGGGGTTTTGAGGGTCAAGTAGGAGTTGGTAATACCTGGAGAGACTCTTTCACCTC
CATCCCTGGACAGTTATGGAGGTCGAAGAGGGGAAGGAAGATGGCTTCTATCACGTGGCA
CCCCCTGTGAGAGGGAGTAGGGGGAGCTCAGGATGACCCTCAGCTGTTCCAATCCAGTAT
TTTTTTCTTTTTTAAAAAATTACTGTATTTATTATGACGATGGTGACTCCCCAGTGCACA
GGGGGGCCAGAATCTGTGTTTCTCTAACCTCTTTGTAAATAAATGCACAGTGTTACATAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               76-264, - strand, RNAz p=0.884064
               

               
               444-830, + strand, RNAz p=0.993018

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-264, - strand, RNAz p=0.884064
               

               
               444-830, + strand, RNAz p=0.993018

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_145056, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_145056, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-416, gnl|bosTau2|chr18 (49776056-49776464)
               

               
               3-416, gnl|Hg17|chr19 (51843571-51843123)
               

               
               3-416, gnl|Mm7|chr7 (14650276-14650711)
               


               
               426-841, gnl|bosTau2|chr18 (49776450-49776884)
               

               
               426-841, gnl|Hg17|chr19 (51843156-51842709)
               

               
               426-841, gnl|Mm7|chr7 (14650677-14651147)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-416, gnl|bosTau2|chr18 (49776056-49776464)
               

               
               3-416, gnl|Hg17|chr19 (51843571-51843123)
               

               
               3-416, gnl|Mm7|chr7 (14650276-14650711)
               


               
               426-841, gnl|bosTau2|chr18 (49776450-49776884)
               

               
               426-841, gnl|Hg17|chr19 (51843156-51842709)
               

               
               426-841, gnl|Mm7|chr7 (14650677-14651147)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ece (0.45861)
               

               
               ill (0.351185)
               

               
               fbs (0.350693)
               

               
               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               ill (0.351185)
               

               
               fbs (0.350693)
               

               
               pla (0.267344)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	76-264, - strand, RNAz p=0.884064
	444-830, + strand, RNAz p=0.993018

	3-416, gnl\|bosTau2\|chr18 (49776056-49776464)
	3-416, gnl\|Hg17\|chr19 (51843571-51843123)
	3-416, gnl\|Mm7\|chr7 (14650276-14650711)

	426-841, gnl\|bosTau2\|chr18 (49776450-49776884)
	426-841, gnl\|Hg17\|chr19 (51843156-51842709)
	426-841, gnl\|Mm7\|chr7 (14650677-14651147)

	ece (0.45861)
	ill (0.351185)
	fbs (0.350693)
	pla (0.267344)
	fcc (0.197785)
	fhi (0.169578)
	hyp (0.142837)
	ute (0.132784)
	ese (0.126502)