Ss1.1-Mixn-0019f13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAACCCCAGCAAACACATCAACATCGAGCGCTCCAACACACGCTCCAGCCTGGCCGAGGT TCAGAGCGAGATCGAGCGAATCTTCGAGCTGGCCCGGACCCTTCAGTTGGTTGCTCTGGA TGCCGACACCATCAACCACCCAGCCCAGCTCTCCAAGACCTCACTGGCCCCCATCATTGT TTACATCAAGATCACCTCTCCCAAGGTACTTCAGAGGCTCATCAAGTCTCGAGGGAAGTC TCAGTCCAAACACCTCAATGTCCAAATAGCGGCCTCGGAGAAGCTGGCGCAGTGTCCCCC TGAAATGTTTGACATCATCCTGGACGAGAACCAATTGGAGGATGCCTGCGAGCACTTGGC CGAGTACTTGGAAGCCTATTGGAAGGCTACACACCCGCCCAGCAGCACTCCGCCCAATCC GCTGCTGAACCGCACCATGGCTACTGCAGCCCTGGCTGCCAGCCCTGCCCCTGTCTCCAA CCTCCAGGTACAGGTGCTCACCTCACTCAGGAGGAATCTCAGCTTCTGGGGAGGGCTGGA GGCGTCGCAGCGGGCCAGGGCGGTGCCCCAGCAGCAGGAGCACACCATGTAGGGGCCCCG CCCAACCCCCCTCCCGCCCAGGGCTCAGAACTGGAGCCCCGGAGCGCAGGGAACATGGGG AAGGAAGGGAAGAGTTTTATTTTGTAAAAAATGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAACCCCAGCAAACACATCAACATCGAGCGCTCCAACACACGCTCCAGCCTGGCCGAGGT TCAGAGCGAGATCGAGCGAATCTTCGAGCTGGCCCGGACCCTTCAGTTGGTTGCTCTGGA TGCCGACACCATCAACCACCCAGCCCAGCTCTCCAAGACCTCACTGGCCCCCATCATTGT TTACATCAAGATCACCTCTCCCAAGGTACTTCAGAGGCTCATCAAGTCTCGAGGGAAGTC TCAGTCCAAACACCTCAATGTCCAAATAGCGGCCTCGGAGAAGCTGGCGCAGTGTCCCCC TGAAATGTTTGACATCATCCTGGACGAGAACCAATTGGAGGATGCCTGCGAGCACTTGGC CGAGTACTTGGAAGCCTATTGGAAGGCTACACACCCGCCCAGCAGCACTCCGCCCAATCC GCTGCTGAACCGCACCATGGCTACTGCAGCCCTGGCTGCCAGCCCTGCCCCTGTCTCCAA CCTCCAGGTACAGGTGCTCACCTCACTCAGGAGGAATCTCAGCTTCTGGGGAGGGCTGGA GGCGTCGCAGCGGGCCAGGGCGGTGCCCCAGCAGCAGGAGCACACCATGTAGGGGCCCCG CCCAACCCCCCTCCCGCCCAGGGCTCAGAACTGGAGCCCCGGAGCGCAGGGAACATGGGG AAGGAAGGGAAGAGTTTTATTTTGTAAAAAATGTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 48-166, - strand, RNAz p=0.601132 | |
| 374-696, - strand, RNAz p=0.939329 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 48-166, - strand, RNAz p=0.601132 | |
| 374-696, - strand, RNAz p=0.939329 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 48-207, gnl|bosTau2|chr19 (34784382-34784541) | |
| 48-207, gnl|canFam2|chr9 (26517143-26517028) | |
| 48-207, gnl|danRer3|chr3 (6146321-6146434) | |
| 48-207, gnl|dasNov1|scaffold_2209 (48449-48573) | |
| 48-207, gnl|echTel1|scaffold_322919 (6659-6774) | |
| 48-207, gnl|fr1|chrUn (17637087-17637202) | |
| 48-207, gnl|galGal2|chr2 (18433705-18433817) | |
| 48-207, gnl|hg17|chr17 (34593484-34593599) | |
| 48-207, gnl|Hg17|chr17 (34593649-34593490) | |
| 48-207, gnl|loxAfr1|scaffold_3686 (36044-35929) | |
| 48-207, gnl|mm7|chr11 (98118312-98118427) | |
| 48-207, gnl|Mm7|chr11 (98118476-98118318) | |
| 48-207, gnl|monDom2|scaffold_18 (48139501-48139613) | |
| 48-207, gnl|oryCun1|scaffold_177641 (16694-16809) | |
| 48-207, gnl|panTro1|chr19 (37827319-37827434) | |
| 48-207, gnl|rheMac2|chr16 (49257676-49257791) | |
| 48-207, gnl|rn3|chr10 (86786618-86786733) | |
| 48-207, gnl|tetNig1|chr3 (13140067-13139958) | |
| 48-207, gnl|xenTro1|scaffold_334 (319651-319538) | |
| 295-696, gnl|bosTau2|chr19 (34788192-34788584) | |
| 295-696, gnl|Hg17|chr17 (34587321-34586924) | |
| 295-696, gnl|Mm7|chr11 (98114360-98113973) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 48-207, gnl|bosTau2|chr19 (34784382-34784541) | |
| 48-207, gnl|canFam2|chr9 (26517143-26517028) | |
| 48-207, gnl|danRer3|chr3 (6146321-6146434) | |
| 48-207, gnl|dasNov1|scaffold_2209 (48449-48573) | |
| 48-207, gnl|echTel1|scaffold_322919 (6659-6774) | |
| 48-207, gnl|fr1|chrUn (17637087-17637202) | |
| 48-207, gnl|galGal2|chr2 (18433705-18433817) | |
| 48-207, gnl|hg17|chr17 (34593484-34593599) | |
| 48-207, gnl|Hg17|chr17 (34593649-34593490) | |
| 48-207, gnl|loxAfr1|scaffold_3686 (36044-35929) | |
| 48-207, gnl|mm7|chr11 (98118312-98118427) | |
| 48-207, gnl|Mm7|chr11 (98118476-98118318) | |
| 48-207, gnl|monDom2|scaffold_18 (48139501-48139613) | |
| 48-207, gnl|oryCun1|scaffold_177641 (16694-16809) | |
| 48-207, gnl|panTro1|chr19 (37827319-37827434) | |
| 48-207, gnl|rheMac2|chr16 (49257676-49257791) | |
| 48-207, gnl|rn3|chr10 (86786618-86786733) | |
| 48-207, gnl|tetNig1|chr3 (13140067-13139958) | |
| 48-207, gnl|xenTro1|scaffold_334 (319651-319538) | |
| 295-696, gnl|bosTau2|chr19 (34788192-34788584) | |
| 295-696, gnl|Hg17|chr17 (34587321-34586924) | |
| 295-696, gnl|Mm7|chr11 (98114360-98113973) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.379507) | |
| nep (0.183925) |