Non-Coding RNA Search

Ss1.1-Mixn-0019f15.5

Sequence:


               
               CCCATTTGTAATAGCATATCTGGGGCTCTTACCTACACCAGGATAGAAAGCACATCATGA
AATTTGTAAATGTCTTGTGTGTCTTAGGAAAACTGCTGAACAACCATCAGTGGTGGATTA
TGCTTTGATCGGCATTTTTGTCATGAGAATGTATTTTGCTGATATATCGACTCAGCTGTC
TATTTTGGACCTCTCTGGCTGTCATGATTATGTTTTTTGAGATTAGTTAAGAGTCAGAGT
TGAAGGTGCAGGACAATACCATGAACAATACTTATTGGTTTATCATGAAATTGATGCTGC
CTGACCAAATGAGGTGACTTCAGGTCATATGTGACCACTTTCAGAGCGAGGTAACTGTCA
CTGTGCAGAGGAAATTCCAAAAGGAAAAGGCACAGCTGCCATCACACAGATATTATTGAG
CATTCTTAATACCCGGGGTTGTCATTAATAACTTACTTATTTGGAGAGATGTGTTTGAGC
ATGCAGAAGCCCTGCACTTCCCTCAAAACTGTAGAATGCATTAAGAGCCCATCACATGGG
ACAATCAAAGGTAGAAACAAAAAGGATGTTCCCCTGCATATTTTTCTTGTATATGAAGTA
GAAAACATTCTACCTGGTGAGAAATAATACAGTTTCTAGTTATCTGGATGTTTGTTGAAA
ATACATTAGATATATTCCCTGAGATTTAAAAAAACAAAACAAAAAACAGTATAACATGAC
CAGTCTGGTTAAAAGGGTTGAATAAAACAGCTAGTATTATGGCTCCGTTTCCTACTGCTG
CAGATGTGAATGGTCTTGGTCATTCCACAGGAGTCAGAACTTCCTTCCCCACTGAGGAGG
AACAGCTTTTCGTGTTGTGAGCAGAGCCTCCACTCCAAACACAAGGCAGTGTGGTTGCTA
GCCCCAGGGAGCAGGTGGCTTGATTAGCAAACCTCACCTGCAGAATCCATTGCAACTTTC
AACAGTGAAGTGATCCATTTCCATTACTACTTTATTTATAGCATTTTTCTCTACTCTATA
AAGGGAAGACATTGACTTTCACTGGAGAACGGGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATTTGTAATAGCATATCTGGGGCTCTTACCTACACCAGGATAGAAAGCACATCATGA
AATTTGTAAATGTCTTGTGTGTCTTAGGAAAACTGCTGAACAACCATCAGTGGTGGATTA
TGCTTTGATCGGCATTTTTGTCATGAGAATGTATTTTGCTGATATATCGACTCAGCTGTC
TATTTTGGACCTCTCTGGCTGTCATGATTATGTTTTTTGAGATTAGTTAAGAGTCAGAGT
TGAAGGTGCAGGACAATACCATGAACAATACTTATTGGTTTATCATGAAATTGATGCTGC
CTGACCAAATGAGGTGACTTCAGGTCATATGTGACCACTTTCAGAGCGAGGTAACTGTCA
CTGTGCAGAGGAAATTCCAAAAGGAAAAGGCACAGCTGCCATCACACAGATATTATTGAG
CATTCTTAATACCCGGGGTTGTCATTAATAACTTACTTATTTGGAGAGATGTGTTTGAGC
ATGCAGAAGCCCTGCACTTCCCTCAAAACTGTAGAATGCATTAAGAGCCCATCACATGGG
ACAATCAAAGGTAGAAACAAAAAGGATGTTCCCCTGCATATTTTTCTTGTATATGAAGTA
GAAAACATTCTACCTGGTGAGAAATAATACAGTTTCTAGTTATCTGGATGTTTGTTGAAA
ATACATTAGATATATTCCCTGAGATTTAAAAAAACAAAACAAAAAACAGTATAACATGAC
CAGTCTGGTTAAAAGGGTTGAATAAAACAGCTAGTATTATGGCTCCGTTTCCTACTGCTG
CAGATGTGAATGGTCTTGGTCATTCCACAGGAGTCAGAACTTCCTTCCCCACTGAGGAGG
AACAGCTTTTCGTGTTGTGAGCAGAGCCTCCACTCCAAACACAAGGCAGTGTGGTTGCTA
GCCCCAGGGAGCAGGTGGCTTGATTAGCAAACCTCACCTGCAGAATCCATTGCAACTTTC
AACAGTGAAGTGATCCATTTCCATTACTACTTTATTTATAGCATTTTTCTCTACTCTATA
AAGGGAAGACATTGACTTTCACTGGAGAACGGGAGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1049, gnl|bosTau2|chr10 (65399765-65398734)
               

               
               1-1049, gnl|Hg17|chr14 (85162229-85163254)
               

               
               1-1049, gnl|Mm7|chr12 (93261066-93262016)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1049, gnl|bosTau2|chr10 (65399765-65398734)
               

               
               1-1049, gnl|Hg17|chr14 (85162229-85163254)
               

               
               1-1049, gnl|Mm7|chr12 (93261066-93262016)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               cbe (0.239234)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

	1-1049, gnl\|bosTau2\|chr10 (65399765-65398734)
	1-1049, gnl\|Hg17\|chr14 (85162229-85163254)
	1-1049, gnl\|Mm7\|chr12 (93261066-93262016)