Non-Coding RNA Search

Ss1.1-Mixn-0019g18.5

Sequence:


               
               ACACTCTGCTGCACAACCCGGCCCTGCAGGCCTTCCGGAAGACAGCCCTATCAGGTGCCC
GGGCCAATGGCGCCCAGCCCTGAAGGTGGGGAAGGCCATGCCACCATGCCCTCGCCCGTG
CTGAGGTGTTTTCCCTCCTCCCAGCCCACTCCCTCCCTGGCTCTCTCGGCATCATCATCA
CTCCAACCATGACCACCTCTCTGCTTGGCACCAGCTCCGCAGGTCCTAGGGGTTCAGGGC
TGCCAGGGGTTGCCATGGTTGGGTGGAGGTCTGTCAGCACTATGAGTCTTGGGAAGGATC
TGGTCTGCCCCTTTGACCTTGGGAAGCCAGCGAGGGCTCTGGAGAAAGCCAGGGGAGGTT
TGGGCCTTTGGTCCAGGAGTCAGTGGAAGGAGGGCAGCCACATCCAGGCATCCCCAGCCC
CTGGCTCTGCCACCAGCCACCAGGCTTCCTCAAGGCCTTCTCCTGCCTGGGGTTGGTGAT
TTCGTCTGGGACAGACTTGCGTTCCAGCTTGGCCCGCTCAGACTTGGACCTCACCACGGT
GACCCGACACAGCACGTCCTCTCTCCTGACCTCTCCCTTCTCTTCTGGGGGGGCCTCGTG
GCCAGCAAGGCAGCCCCGGGAGGAAGCCATGGGCTTCTACCCAGCAGCGAGGAGTCAGGA
CTCAAACCAGGCCCCACACCGAGCTGCCCACATTTGAGAGCTTGATATTTTTGTAGTTTG
TATGCCTTTAGATACTATGAAAGAGGTCAGTGTGTTCGCTGTAATAAACTTGTCCCTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACTCTGCTGCACAACCCGGCCCTGCAGGCCTTCCGGAAGACAGCCCTATCAGGTGCCC
GGGCCAATGGCGCCCAGCCCTGAAGGTGGGGAAGGCCATGCCACCATGCCCTCGCCCGTG
CTGAGGTGTTTTCCCTCCTCCCAGCCCACTCCCTCCCTGGCTCTCTCGGCATCATCATCA
CTCCAACCATGACCACCTCTCTGCTTGGCACCAGCTCCGCAGGTCCTAGGGGTTCAGGGC
TGCCAGGGGTTGCCATGGTTGGGTGGAGGTCTGTCAGCACTATGAGTCTTGGGAAGGATC
TGGTCTGCCCCTTTGACCTTGGGAAGCCAGCGAGGGCTCTGGAGAAAGCCAGGGGAGGTT
TGGGCCTTTGGTCCAGGAGTCAGTGGAAGGAGGGCAGCCACATCCAGGCATCCCCAGCCC
CTGGCTCTGCCACCAGCCACCAGGCTTCCTCAAGGCCTTCTCCTGCCTGGGGTTGGTGAT
TTCGTCTGGGACAGACTTGCGTTCCAGCTTGGCCCGCTCAGACTTGGACCTCACCACGGT
GACCCGACACAGCACGTCCTCTCTCCTGACCTCTCCCTTCTCTTCTGGGGGGGCCTCGTG
GCCAGCAAGGCAGCCCCGGGAGGAAGCCATGGGCTTCTACCCAGCAGCGAGGAGTCAGGA
CTCAAACCAGGCCCCACACCGAGCTGCCCACATTTGAGAGCTTGATATTTTTGTAGTTTG
TATGCCTTTAGATACTATGAAAGAGGTCAGTGTGTTCGCTGTAATAAACTTGTCCCTAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               419-531, - strand, RNAz p=0.974221

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               419-531, - strand, RNAz p=0.974221

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr21 (23097688-23096935)
               

               
               1-780, gnl|Hg17|chr15 (72259550-72258863)
               

               
               1-780, gnl|Mm7|chr9 (58181461-58182173)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr21 (23097688-23096935)
               

               
               1-780, gnl|Hg17|chr15 (72259550-72258863)
               

               
               1-780, gnl|Mm7|chr9 (58181461-58182173)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cki (0.165235)
               

               
               ute (0.132784)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               ute (0.132784)
               

               
               ova (0.129132)

	1-780, gnl\|bosTau2\|chr21 (23097688-23096935)
	1-780, gnl\|Hg17\|chr15 (72259550-72258863)
	1-780, gnl\|Mm7\|chr9 (58181461-58182173)