Non-Coding RNA Search

Ss1.1-Mixn-0019i13.5

Sequence:


               
               CCCACTCAAGCCCAAGCCACAGAAGCTTCCTTCATTCAAGCCTCCATTGAGGATCTGAGG
GAAGTTGATTGAAAAATCTCCACTAGAGGAACAAAGGAGAAACAGACGAGGCTTGGAAAA
AGAGCCAGAGAAAAATCTCTTTGCCTGAAAGAGGAGGTCCATGTAACTCCTCAGTGTGCT
GTGACAGAGCACAGATGTCCAGTGGCTCCCTGTTGGGAGTCCCCAGCCCCGGGACACAGA
CGGTTAGAGAAGCCACCGCGAACACCTGGGTGAAGACAGAGTGCTATGAAGGATGGTTGG
CCCTCAGTCTGAGACTGTCTCCTTGACTTTGGACTTCGCTTGTTGAACCCCTGAACAGAA
CCAAGGTTGCTAAGAGACCACCTGTACTGCATGCACTTTGTTCTAGCAAGAGCAGCCAGA
GAGAAAACCAAGGAGCAGCGTGATTTACCACTGCCTGGGATTAAGTCAGGGAGCAGGAGA
ATTTTGGCTATGACGTGTAAAAACTGGATGCTCATTTCTACTACTACCCCCACAAGTCTG
GAAGATGAAATTGTGGGAAGACTTCTAAAAATTTTGTTTGTAATCTTTGTTGACTTTCTG
TCTATAATGTATGTTGTTATAACATCTTAGAAAACTGACTTCCCTTACTTTACATGTGAA
TTTCATATTGAACTCCTGTGAATAAATTTTTGTAATTTAATATGTTTAGTGATTTTTGAG
GATATCTCCAATTATTCAAGAAGCAAACAGGACGCTACAATAAAAATCAATATTGTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACTCAAGCCCAAGCCACAGAAGCTTCCTTCATTCAAGCCTCCATTGAGGATCTGAGG
GAAGTTGATTGAAAAATCTCCACTAGAGGAACAAAGGAGAAACAGACGAGGCTTGGAAAA
AGAGCCAGAGAAAAATCTCTTTGCCTGAAAGAGGAGGTCCATGTAACTCCTCAGTGTGCT
GTGACAGAGCACAGATGTCCAGTGGCTCCCTGTTGGGAGTCCCCAGCCCCGGGACACAGA
CGGTTAGAGAAGCCACCGCGAACACCTGGGTGAAGACAGAGTGCTATGAAGGATGGTTGG
CCCTCAGTCTGAGACTGTCTCCTTGACTTTGGACTTCGCTTGTTGAACCCCTGAACAGAA
CCAAGGTTGCTAAGAGACCACCTGTACTGCATGCACTTTGTTCTAGCAAGAGCAGCCAGA
GAGAAAACCAAGGAGCAGCGTGATTTACCACTGCCTGGGATTAAGTCAGGGAGCAGGAGA
ATTTTGGCTATGACGTGTAAAAACTGGATGCTCATTTCTACTACTACCCCCACAAGTCTG
GAAGATGAAATTGTGGGAAGACTTCTAAAAATTTTGTTTGTAATCTTTGTTGACTTTCTG
TCTATAATGTATGTTGTTATAACATCTTAGAAAACTGACTTCCCTTACTTTACATGTGAA
TTTCATATTGAACTCCTGTGAATAAATTTTTGTAATTTAATATGTTTAGTGATTTTTGAG
GATATCTCCAATTATTCAAGAAGCAAACAGGACGCTACAATAAAAATCAATATTGTCTAT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               11-315, gnl|bosTau2|chr28 (11286243-11286534)
               


               
               468-778, gnl|bosTau2|chr28 (11304810-11305123)
               

               
               468-778, gnl|Hg17|chr10 (61166986-61166677)
               

               
               468-778, gnl|Mm7|chr10 (69821686-69821985)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-315, gnl|bosTau2|chr28 (11286243-11286534)
               


               
               468-778, gnl|bosTau2|chr28 (11304810-11305123)
               

               
               468-778, gnl|Hg17|chr10 (61166986-61166677)
               

               
               468-778, gnl|Mm7|chr10 (69821686-69821985)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bfe (0.149858)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               sug (0.127291)

	11-315, gnl\|bosTau2\|chr28 (11286243-11286534)

	468-778, gnl\|bosTau2\|chr28 (11304810-11305123)
	468-778, gnl\|Hg17\|chr10 (61166986-61166677)
	468-778, gnl\|Mm7\|chr10 (69821686-69821985)