Non-Coding RNA Search

Ss1.1-Mixn-0019k06.5

Sequence:


               
               TGTAGGCTGGTTCAAATCCGTGGAGAACTGGACTCACTTTCAAAAGTATCCCATGAAGTT
AAAAACTCACACTGTAAAGGCAGCAGTTCTTAAATTCAATCAACTCTCGTTTTGTTTAAA
GCAAACACAAATCATAGATGAAATCATTTTAAAAGATGTTGTGAGAAACTGGAGAATTTT
TTAAACACCAAGCACAGTTAATTCTAAAATAAAAGAACTGTTAACAGGGAAGATGTTACC
TTTTCACCACCAGGAACATTTTGATGATAGGGGTTTTGGAAAAGCTAAGTCAGAACGACT
TCCCGATGTATATAATATGGAAGTCGGTATTCCAGAGGGATAATCTCACCTACTTGGAAA
AGTCCAGGTCATCTTTGACCTCCCTTGAAAAATAAATCTTTGTGAGCAGACAGCTTGCCC
TTGGTTTTCTTGACTTGATGCAGTTATTTCTAAGGGAAGGAAGAGGGACCAGCGTAATAA
GACACTTTTTCTTAAACACCTCCCAGAGTTACATAAAATGGAGCCCTCCCCAAGCACTTA
CGTATGGGCTGATGCTAAGTGAATGAGGGTGCCTTCTCCTGGTGTTTCTTAGCAGCCACG
TCTCCACCCTTTCTCTCTTTCCATTGTGTGTTTTGACTCCATGTTGCAATACTGTGTCGT
AACGGAACACAACGTGTAGATGTTTACTGCTGCGGTAGGTCGGAAATTTCATTATTTGAT
TTGCACCCTGTGTCGACGTTACCTACGGCTTATTGGAAGCATGACCTCCGAATTCAGTTT
TCGTAAATCTGACTAAACAGACCTCTAGATCCTGGTTTAACCACAGGCTTCTGCTGCCTC
TCCGCCTCTATCTTAACAGTGCTTTTGGAGTCGATACCGGAAGCTTTAAGAGTTAGTTTG
TGCCCTTGGTTTTTATTCTGACAACTGCTAAGATACCTCTGTAAGCCTTACCTTTTATTC
TTTCACACATTGTATAATAAATGTATAGAATTCATTGACCAACTAAAAGGTTGGGTGTCT
GTAAATGAGACCAAAACATGGGTTGCTTTTTTCCATGAAGTCGTTTCTCTCGGGGGTTAC
TGTGCGTGAACAGCAGCTAACCTGTTACTGTGAATGCCTCGCGTCGTCAGTATTTGCATC
ACCTTCATGAACGTGTGCAAGTCCTGTGACTCCCAGCTTAACTGAGATCCTGTTATGCCA
CCTAACTCGAGTACTGCAAACTGGTTTTAGGTTTTAATGGAATTGATGTACAATGATATC
CCATAATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAGGCTGGTTCAAATCCGTGGAGAACTGGACTCACTTTCAAAAGTATCCCATGAAGTT
AAAAACTCACACTGTAAAGGCAGCAGTTCTTAAATTCAATCAACTCTCGTTTTGTTTAAA
GCAAACACAAATCATAGATGAAATCATTTTAAAAGATGTTGTGAGAAACTGGAGAATTTT
TTAAACACCAAGCACAGTTAATTCTAAAATAAAAGAACTGTTAACAGGGAAGATGTTACC
TTTTCACCACCAGGAACATTTTGATGATAGGGGTTTTGGAAAAGCTAAGTCAGAACGACT
TCCCGATGTATATAATATGGAAGTCGGTATTCCAGAGGGATAATCTCACCTACTTGGAAA
AGTCCAGGTCATCTTTGACCTCCCTTGAAAAATAAATCTTTGTGAGCAGACAGCTTGCCC
TTGGTTTTCTTGACTTGATGCAGTTATTTCTAAGGGAAGGAAGAGGGACCAGCGTAATAA
GACACTTTTTCTTAAACACCTCCCAGAGTTACATAAAATGGAGCCCTCCCCAAGCACTTA
CGTATGGGCTGATGCTAAGTGAATGAGGGTGCCTTCTCCTGGTGTTTCTTAGCAGCCACG
TCTCCACCCTTTCTCTCTTTCCATTGTGTGTTTTGACTCCATGTTGCAATACTGTGTCGT
AACGGAACACAACGTGTAGATGTTTACTGCTGCGGTAGGTCGGAAATTTCATTATTTGAT
TTGCACCCTGTGTCGACGTTACCTACGGCTTATTGGAAGCATGACCTCCGAATTCAGTTT
TCGTAAATCTGACTAAACAGACCTCTAGATCCTGGTTTAACCACAGGCTTCTGCTGCCTC
TCCGCCTCTATCTTAACAGTGCTTTTGGAGTCGATACCGGAAGCTTTAAGAGTTAGTTTG
TGCCCTTGGTTTTTATTCTGACAACTGCTAAGATACCTCTGTAAGCCTTACCTTTTATTC
TTTCACACATTGTATAATAAATGTATAGAATTCATTGACCAACTAAAAGGTTGGGTGTCT
GTAAATGAGACCAAAACATGGGTTGCTTTTTTCCATGAAGTCGTTTCTCTCGGGGGTTAC
TGTGCGTGAACAGCAGCTAACCTGTTACTGTGAATGCCTCGCGTCGTCAGTATTTGCATC
ACCTTCATGAACGTGTGCAAGTCCTGTGACTCCCAGCTTAACTGAGATCCTGTTATGCCA
CCTAACTCGAGTACTGCAAACTGGTTTTAGGTTTTAATGGAATTGATGTACAATGATATC
CCATAATAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               459-1272, gnl|bosTau2|chr13 (17878135-17878955)
               

               
               459-1272, gnl|Hg17|chr4 (52623087-52623909)
               

               
               459-1272, gnl|Mm7|chr5 (72934760-72935548)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               459-1272, gnl|bosTau2|chr13 (17878135-17878955)
               

               
               459-1272, gnl|Hg17|chr4 (52623087-52623909)
               

               
               459-1272, gnl|Mm7|chr5 (72934760-72935548)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               eye (0.341006)
               

               
               csk (0.281492)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               eye (0.341006)
               

               
               csk (0.281492)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	459-1272, gnl\|bosTau2\|chr13 (17878135-17878955)
	459-1272, gnl\|Hg17\|chr4 (52623087-52623909)
	459-1272, gnl\|Mm7\|chr5 (72934760-72935548)

	pro (0.512033)
	eye (0.341006)
	csk (0.281492)
	ece (0.229305)
	fcc (0.197785)
	aor (0.195274)
	cmu (0.186393)
	gul (0.177588)
	ill (0.175593)
	lun (0.150489)
	ski (0.146735)
	nca (0.136874)
	thg (0.126791)
	bla (0.124347)
	spc (0.113366)
	cty (0.10408)