Non-Coding RNA Search

Ss1.1-Mixn-0019l02.5

Sequence:


               
               GGCTTCTCCCTGGTTGCAATCGGTACAAAAGGCGTGCAGTGGATGGAGCTGGTCAAGATC
GTTGCTTCTTGGTTTATATCTCCACTGTTGTCTGGTTTCATGTCTGGCGTGCTGTTTGTA
CTGATCAGAATGTTCATCTTAAAAAAGGAGGACCCTGTGCCCAACGGCCTCCGGGCGCTT
CCCGTGTTCTATGCCGCCACCATCGCCATCAACGTCTTTTCCATCATGTACACGGGGGCA
CCAGTGCTGGGCCTGGTGCTTCCCATGTGGGCGATCGCTCTCATCTCCTTCGGCGTTGCA
CTGCTCTTCGCCCTCTTTGTGTGGCTCTTTGTGTGTCCGTGGATGCGGAGGAAAATAGCA
GGCAAATTACAAAAAGAAGGTGCTTTATCACGGATCTCTGATGAAAGCCTGAATAAAATC
CAGGAAGTAGAATCCCCAGTATTTAAAGAGCTACCAGGTGCCAAGGCTAATGACGACAGC
ACCGTACCCCTCACAGGGTCGGCCGCAGAGCCGCCTGTGACATCGGAAGGCACTGCAGTG
GGACACCACCCTCGGGCCACCTACGGCAGGGCGCTCTCCATGACGCATGGCGCCACCAGG
TCACCCGTGTCCAATGGCACCTTTGGCTTCGACGGCTCGGCGCGGGGCGACAGCCATGTG
TACCACACGGTGCACAAGGATTCAGGGCTCTATCAGGATCTGCTGCACCGCATCCGCGAT
GAGCGGCCGGCACCCGACGGGGCCCCGCGGCTGCTGCGGCGCAACAACAGCTACACGTGC
TACACGGCGGCCATCTGCGGGCTGCCCGGCTTGGCCACGCGCCGCCCCGCGCCCAACGCG
CCCGAGGACAGTGAGAAGCTGGTGGCCGATGCTGTGGCCTACTCCCGCCGGCGGCTGCGC
TACGACAGCTACTCCAGCTACTGCAACGCCGTGGCCGAGGCCGAGATCGAGGCCGAGGAG
GGCGGCGTGGAGGTCAAGCTGGCGGCCCCGCTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTCTCCCTGGTTGCAATCGGTACAAAAGGCGTGCAGTGGATGGAGCTGGTCAAGATC
GTTGCTTCTTGGTTTATATCTCCACTGTTGTCTGGTTTCATGTCTGGCGTGCTGTTTGTA
CTGATCAGAATGTTCATCTTAAAAAAGGAGGACCCTGTGCCCAACGGCCTCCGGGCGCTT
CCCGTGTTCTATGCCGCCACCATCGCCATCAACGTCTTTTCCATCATGTACACGGGGGCA
CCAGTGCTGGGCCTGGTGCTTCCCATGTGGGCGATCGCTCTCATCTCCTTCGGCGTTGCA
CTGCTCTTCGCCCTCTTTGTGTGGCTCTTTGTGTGTCCGTGGATGCGGAGGAAAATAGCA
GGCAAATTACAAAAAGAAGGTGCTTTATCACGGATCTCTGATGAAAGCCTGAATAAAATC
CAGGAAGTAGAATCCCCAGTATTTAAAGAGCTACCAGGTGCCAAGGCTAATGACGACAGC
ACCGTACCCCTCACAGGGTCGGCCGCAGAGCCGCCTGTGACATCGGAAGGCACTGCAGTG
GGACACCACCCTCGGGCCACCTACGGCAGGGCGCTCTCCATGACGCATGGCGCCACCAGG
TCACCCGTGTCCAATGGCACCTTTGGCTTCGACGGCTCGGCGCGGGGCGACAGCCATGTG
TACCACACGGTGCACAAGGATTCAGGGCTCTATCAGGATCTGCTGCACCGCATCCGCGAT
GAGCGGCCGGCACCCGACGGGGCCCCGCGGCTGCTGCGGCGCAACAACAGCTACACGTGC
TACACGGCGGCCATCTGCGGGCTGCCCGGCTTGGCCACGCGCCGCCCCGCGCCCAACGCG
CCCGAGGACAGTGAGAAGCTGGTGGCCGATGCTGTGGCCTACTCCCGCCGGCGGCTGCGC
TACGACAGCTACTCCAGCTACTGCAACGCCGTGGCCGAGGCCGAGATCGAGGCCGAGGAG
GGCGGCGTGGAGGTCAAGCTGGCGGCCCCGCTGGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57618973|ref|NP_001009839.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57618973|ref|NP_001009839.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               241-365, gnl|bosTau2|chr27 (23754513-23754389)
               

               
               241-365, gnl|Hg17|chr8 (42421441-42421317)
               

               
               241-365, gnl|Mm7|chr8 (21344255-21344379)
               


               
               565-995, gnl|bosTau2|chr27 (23748035-23747608)
               

               
               565-995, gnl|Hg17|chr8 (42414253-42413805)
               

               
               565-995, gnl|Mm7|chr8 (21346203-21346654)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               241-365, gnl|bosTau2|chr27 (23754513-23754389)
               

               
               241-365, gnl|Hg17|chr8 (42421441-42421317)
               

               
               241-365, gnl|Mm7|chr8 (21344255-21344379)
               


               
               565-995, gnl|bosTau2|chr27 (23748035-23747608)
               

               
               565-995, gnl|Hg17|chr8 (42414253-42413805)
               

               
               565-995, gnl|Mm7|chr8 (21346203-21346654)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	241-365, gnl\|bosTau2\|chr27 (23754513-23754389)
	241-365, gnl\|Hg17\|chr8 (42421441-42421317)
	241-365, gnl\|Mm7\|chr8 (21344255-21344379)

	565-995, gnl\|bosTau2\|chr27 (23748035-23747608)
	565-995, gnl\|Hg17\|chr8 (42414253-42413805)
	565-995, gnl\|Mm7\|chr8 (21346203-21346654)