Non-Coding RNA Search

Ss1.1-Mixn-0019n22.5

Sequence:


               
               CGCGGCCGGAGGCTTTGCAGGTGGAAAGATGGCGTTTGTGAAGAGTGGATGGTTGCTGCG
ACAGAGTACTATTTTGAAGCGCTGGAAGAAGAATTGGTTTGATCTGTGGTCAGATGGTCA
TCTGATCTATTATGATGACCAAACTCGGCAGAGTGTAGAGGATAAGGTCCACATGCCAGT
GGACTGCATCAACATCCGCACAGGACATGAATGTCGGGATATTCAACCTCCAGATGGGAA
GCCAAAAGACTGTATGCTGCAGATTGTTTGCCGAGATGGGAAAACCATCAGTCTTTGTGC
AGAAAGCACAGATGATTGTTTGGCCTGGAAATTCACACTCCAGGATTCCAGGACAAACAC
AGCTTATGTTGGCTCAGAAGTCATGTATGATGAGACTGCCGTGGCATCCTCCCCACCTCC
TTACACAGCCTATGCTGCACCCACCCCTGAGCAGGCATATGGCTATGGTCCATACAGTGG
TGCGTACCCACCAGGAACTCAAGTCGTCTATGCTGCAAATGGGCAGGCTTATGCTATACC
GTACCAGTACCCATATGCAGGCATGGAATATGATGCAGCTAAACCAGAGGAGTGAGGAAA
CTCCCTAATTGCTGATGTGCATGGATTTCCAAAGTGAAAAACGTGAGATGAGAGAGGGCT
GTGTCACCGTGGAGGGAAATCTGGTTGGGTCTTCTAGCTGCCCTCTACCCTGAATGTGCA
TAGCTTCTGATACCCTGTGTGCAATAATATAATTTGCAGGGCATTTCTGTTTGTGATAAA
TGTTTTTAATAATAGTTTTAATAGGTCTTTTGAAAGTAGTGACATCATACTTATAACTAA
TCTATGTAAGTACCATGGAGAAGGCTTTGGACTGCTGTTAGTGAAAACATGGACTATTTG
GGGGCACTGGCTCATTCTAGAAGTTTCCTCGTGGAACCCTCAGAATACCTTGTTTGAACA
CACCTATTTTGAAAGGCCATTTTCTTTTTAGAATTTGGTGTAGTGCTTAAGGGATAATTT
ATTGTAGTGTTATGCTAGTGACATGGTGATGTATGAGTGTTGAGTGATTGTGGCAAGAAA
AACTGCAGCTTTTTTGGTGTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCCGGAGGCTTTGCAGGTGGAAAGATGGCGTTTGTGAAGAGTGGATGGTTGCTGCG
ACAGAGTACTATTTTGAAGCGCTGGAAGAAGAATTGGTTTGATCTGTGGTCAGATGGTCA
TCTGATCTATTATGATGACCAAACTCGGCAGAGTGTAGAGGATAAGGTCCACATGCCAGT
GGACTGCATCAACATCCGCACAGGACATGAATGTCGGGATATTCAACCTCCAGATGGGAA
GCCAAAAGACTGTATGCTGCAGATTGTTTGCCGAGATGGGAAAACCATCAGTCTTTGTGC
AGAAAGCACAGATGATTGTTTGGCCTGGAAATTCACACTCCAGGATTCCAGGACAAACAC
AGCTTATGTTGGCTCAGAAGTCATGTATGATGAGACTGCCGTGGCATCCTCCCCACCTCC
TTACACAGCCTATGCTGCACCCACCCCTGAGCAGGCATATGGCTATGGTCCATACAGTGG
TGCGTACCCACCAGGAACTCAAGTCGTCTATGCTGCAAATGGGCAGGCTTATGCTATACC
GTACCAGTACCCATATGCAGGCATGGAATATGATGCAGCTAAACCAGAGGAGTGAGGAAA
CTCCCTAATTGCTGATGTGCATGGATTTCCAAAGTGAAAAACGTGAGATGAGAGAGGGCT
GTGTCACCGTGGAGGGAAATCTGGTTGGGTCTTCTAGCTGCCCTCTACCCTGAATGTGCA
TAGCTTCTGATACCCTGTGTGCAATAATATAATTTGCAGGGCATTTCTGTTTGTGATAAA
TGTTTTTAATAATAGTTTTAATAGGTCTTTTGAAAGTAGTGACATCATACTTATAACTAA
TCTATGTAAGTACCATGGAGAAGGCTTTGGACTGCTGTTAGTGAAAACATGGACTATTTG
GGGGCACTGGCTCATTCTAGAAGTTTCCTCGTGGAACCCTCAGAATACCTTGTTTGAACA
CACCTATTTTGAAAGGCCATTTTCTTTTTAGAATTTGGTGTAGTGCTTAAGGGATAATTT
ATTGTAGTGTTATGCTAGTGACATGGTGATGTATGAGTGTTGAGTGATTGTGGCAAGAAA
AACTGCAGCTTTTTTGGTGTAATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55733254|emb|CAH93310.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55733254|emb|CAH93310.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-371, - strand, RNAz p=0.997122

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-371, - strand, RNAz p=0.997122

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-561, gnl|bosTau2|chr8 (7990154-7989600)
               

               
               4-561, gnl|Hg17|chr18 (55747428-55748433)
               

               
               4-561, gnl|Mm7|chr1 (35085094-35100135)
               


               
               680-1104, gnl|bosTau2|chr8 (8289178-8289599)
               

               
               680-1104, gnl|Hg17|chr2 (131738060-131738488)
               

               
               680-1104, gnl|Mm7|chr1 (35100253-35100669)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-561, gnl|bosTau2|chr8 (7990154-7989600)
               

               
               4-561, gnl|Hg17|chr18 (55747428-55748433)
               

               
               4-561, gnl|Mm7|chr1 (35085094-35100135)
               


               
               680-1104, gnl|bosTau2|chr8 (8289178-8289599)
               

               
               680-1104, gnl|Hg17|chr2 (131738060-131738488)
               

               
               680-1104, gnl|Mm7|chr1 (35100253-35100669)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	4-561, gnl\|bosTau2\|chr8 (7990154-7989600)
	4-561, gnl\|Hg17\|chr18 (55747428-55748433)
	4-561, gnl\|Mm7\|chr1 (35085094-35100135)

	680-1104, gnl\|bosTau2\|chr8 (8289178-8289599)
	680-1104, gnl\|Hg17\|chr2 (131738060-131738488)
	680-1104, gnl\|Mm7\|chr1 (35100253-35100669)

	lnt (0.142308)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)