Non-Coding RNA Search

Ss1.1-Mixn-0019o12.5

Sequence:


               
               CTGCACCCGATTTTACACGGCGGAGATGGTGTCTGCCCTGGAGTACTTGCATGGCAAGGG
CATCATCCACAGGGACCTGAAACCAGAAAACATCTTGCTAAATGAAGACATGCACATCCA
GATCACAGATTTTGGAACAGCCAAAGTCTTGTCCCCAGAGAGTAAGCAAGCCAGGGCCAA
CTCGTTTGTAGGAACGGCCCAGTATGTTTCTCCAGAGCTGCTCACAGAGAAGTCGGCCTG
TAAAAGTTCAGACCTTTGGGCTCTTGGATGCATAATATACCAGCTTGTGGCAGGACTGCC
CCCGTTCCGAGCTGGAAATGAATATCTTATATTTCAGAAGATCATTAAGTTGGAATATGA
CTTTCCTGAAAAATTCTTTCCTAAAGCAAGAGATCTTGTGGAAAAACTTCTGGTCCTAGA
TGCCACCAAGCGATTAGGCTGTGAAGAAATGGGAGGGTACAGCCCTCTGAAGGCTCACGC
GTTCTTCGAGTCGGTCATGTGGGAGAACCTGCATCATCAGACGCCCCCGAAGCTCACGGC
CTACCTCCCGGCCATGTCGGAGGACGACGAGGACTGCTACGGCAACTACGACAACCTCCT
GAGCCAGTTCGGCTGCATGCAGGTGTCTTCGTCGCCCTCTTCCCAGTCCCTGTCTGCCGT
GGACGCGGGCCTGCCCCAGAGGGCGGGCAGCAACATCGAGCAGTATATCCACGACCTGGA
CACTAATTCTTTTGAACTGGATTTACAGTTTTCTGAGGATGAGAAGAGGTTGTTGCTGGA
GAAGCAGGCCAGCGGAAACCCTTGGCACCAGTTTGTAGAAAATAATTTAATACTGAAAAT
GGGTCCAGTAGACAAGCGAAAGGGTTTGTTTGCGCGGCGACGACAGTTACTGCTCACGGA
AGGGCCGCACTTATATTACGTGGATCCTGTCAACAAAGTCTTGAAAGGTGAAATTCCGTG
GTCACAAGAACTCCGACCAGAGGCCAAGAATTTTAAAACCTTCTTTGTCCACACGCCGAA
TAGGACGTATTACCTGATGGACCCGAGCGGGAATGCTCACAAATGGTGCAAAAAGATCCA
GGAGGTGTGGAGGCACAGATACCAGAGCCACCCAGATGCCGCTGTGCAGTGACGCCTGCG
GCCACTGCCCTTGCTGCAGGACATGTGCCCAGCATGGCTCGCAGCCATCCGGACGCTTCC
AGACCACCCGCCAGCCATTTCAAGGGGGACACAGACGGCAGAAGCTTGCAGCTTTTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCACCCGATTTTACACGGCGGAGATGGTGTCTGCCCTGGAGTACTTGCATGGCAAGGG
CATCATCCACAGGGACCTGAAACCAGAAAACATCTTGCTAAATGAAGACATGCACATCCA
GATCACAGATTTTGGAACAGCCAAAGTCTTGTCCCCAGAGAGTAAGCAAGCCAGGGCCAA
CTCGTTTGTAGGAACGGCCCAGTATGTTTCTCCAGAGCTGCTCACAGAGAAGTCGGCCTG
TAAAAGTTCAGACCTTTGGGCTCTTGGATGCATAATATACCAGCTTGTGGCAGGACTGCC
CCCGTTCCGAGCTGGAAATGAATATCTTATATTTCAGAAGATCATTAAGTTGGAATATGA
CTTTCCTGAAAAATTCTTTCCTAAAGCAAGAGATCTTGTGGAAAAACTTCTGGTCCTAGA
TGCCACCAAGCGATTAGGCTGTGAAGAAATGGGAGGGTACAGCCCTCTGAAGGCTCACGC
GTTCTTCGAGTCGGTCATGTGGGAGAACCTGCATCATCAGACGCCCCCGAAGCTCACGGC
CTACCTCCCGGCCATGTCGGAGGACGACGAGGACTGCTACGGCAACTACGACAACCTCCT
GAGCCAGTTCGGCTGCATGCAGGTGTCTTCGTCGCCCTCTTCCCAGTCCCTGTCTGCCGT
GGACGCGGGCCTGCCCCAGAGGGCGGGCAGCAACATCGAGCAGTATATCCACGACCTGGA
CACTAATTCTTTTGAACTGGATTTACAGTTTTCTGAGGATGAGAAGAGGTTGTTGCTGGA
GAAGCAGGCCAGCGGAAACCCTTGGCACCAGTTTGTAGAAAATAATTTAATACTGAAAAT
GGGTCCAGTAGACAAGCGAAAGGGTTTGTTTGCGCGGCGACGACAGTTACTGCTCACGGA
AGGGCCGCACTTATATTACGTGGATCCTGTCAACAAAGTCTTGAAAGGTGAAATTCCGTG
GTCACAAGAACTCCGACCAGAGGCCAAGAATTTTAAAACCTTCTTTGTCCACACGCCGAA
TAGGACGTATTACCTGATGGACCCGAGCGGGAATGCTCACAAATGGTGCAAAAAGATCCA
GGAGGTGTGGAGGCACAGATACCAGAGCCACCCAGATGCCGCTGTGCAGTGACGCCTGCG
GCCACTGCCCTTGCTGCAGGACATGTGCCCAGCATGGCTCGCAGCCATCCGGACGCTTCC
AGACCACCCGCCAGCCATTTCAAGGGGGACACAGACGGCAGAAGCTTGCAGCTTTTTTAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56966617|pdb|1W1H|D

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|56966617|pdb|1W1H|D

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1149-1260, - strand, RNAz p=0.824511

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1149-1260, - strand, RNAz p=0.824511

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               587-805, gnl|bosTau2|chr25 (180652-180870)
               

               
               587-805, gnl|canFam2|chr6 (41483343-41483079)
               

               
               587-805, gnl|danRer3|chrNA (20289580-20289313)
               

               
               587-805, gnl|echTel1|scaffold_162626 (1747-1504)
               

               
               587-805, gnl|fr1|chrUn (101914927-101914679)
               

               
               587-805, gnl|galGal2|chr14 (9385075-9385326)
               

               
               587-805, gnl|hg17|chr16 (2576645-2576907)
               

               
               587-805, gnl|Hg17|chr16 (2576678-2576896)
               

               
               587-805, gnl|loxAfr1|scaffold_109224 (1565-1812)
               

               
               587-805, gnl|mm7|chr17 (22269190-22268931)
               

               
               587-805, gnl|Mm7|chr17 (22269157-22268939)
               

               
               587-805, gnl|monDom2|scaffold_49 (7615990-7615740)
               

               
               587-805, gnl|oryCun1|scaffold_58333 (1529-1293)
               

               
               587-805, gnl|panTro1|chr18 (2391122-2391384)
               

               
               587-805, gnl|rheMac2|chr20 (2610133-2610395)
               

               
               587-805, gnl|rn3|chr10 (13339979-13339720)
               

               
               587-805, gnl|tetNig1|chr2 (4702377-4702135)
               

               
               587-805, gnl|xenTro1|scaffold_254 (691333-691570)
               


               
               1002-1260, gnl|bosTau2|chr25 (189503-189755)
               

               
               1002-1260, gnl|Hg17|chr16 (2587640-2587907)
               

               
               1002-1260, gnl|Mm7|chr17 (22260091-22259823)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               587-805, gnl|bosTau2|chr25 (180652-180870)
               

               
               587-805, gnl|canFam2|chr6 (41483343-41483079)
               

               
               587-805, gnl|danRer3|chrNA (20289580-20289313)
               

               
               587-805, gnl|echTel1|scaffold_162626 (1747-1504)
               

               
               587-805, gnl|fr1|chrUn (101914927-101914679)
               

               
               587-805, gnl|galGal2|chr14 (9385075-9385326)
               

               
               587-805, gnl|hg17|chr16 (2576645-2576907)
               

               
               587-805, gnl|Hg17|chr16 (2576678-2576896)
               

               
               587-805, gnl|loxAfr1|scaffold_109224 (1565-1812)
               

               
               587-805, gnl|mm7|chr17 (22269190-22268931)
               

               
               587-805, gnl|Mm7|chr17 (22269157-22268939)
               

               
               587-805, gnl|monDom2|scaffold_49 (7615990-7615740)
               

               
               587-805, gnl|oryCun1|scaffold_58333 (1529-1293)
               

               
               587-805, gnl|panTro1|chr18 (2391122-2391384)
               

               
               587-805, gnl|rheMac2|chr20 (2610133-2610395)
               

               
               587-805, gnl|rn3|chr10 (13339979-13339720)
               

               
               587-805, gnl|tetNig1|chr2 (4702377-4702135)
               

               
               587-805, gnl|xenTro1|scaffold_254 (691333-691570)
               


               
               1002-1260, gnl|bosTau2|chr25 (189503-189755)
               

               
               1002-1260, gnl|Hg17|chr16 (2587640-2587907)
               

               
               1002-1260, gnl|Mm7|chr17 (22260091-22259823)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               hea (0.204499)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               ssp (0.13552)

	587-805, gnl\|bosTau2\|chr25 (180652-180870)
	587-805, gnl\|canFam2\|chr6 (41483343-41483079)
	587-805, gnl\|danRer3\|chrNA (20289580-20289313)
	587-805, gnl\|echTel1\|scaffold_162626 (1747-1504)
	587-805, gnl\|fr1\|chrUn (101914927-101914679)
	587-805, gnl\|galGal2\|chr14 (9385075-9385326)
	587-805, gnl\|hg17\|chr16 (2576645-2576907)
	587-805, gnl\|Hg17\|chr16 (2576678-2576896)
	587-805, gnl\|loxAfr1\|scaffold_109224 (1565-1812)
	587-805, gnl\|mm7\|chr17 (22269190-22268931)
	587-805, gnl\|Mm7\|chr17 (22269157-22268939)
	587-805, gnl\|monDom2\|scaffold_49 (7615990-7615740)
	587-805, gnl\|oryCun1\|scaffold_58333 (1529-1293)
	587-805, gnl\|panTro1\|chr18 (2391122-2391384)
	587-805, gnl\|rheMac2\|chr20 (2610133-2610395)
	587-805, gnl\|rn3\|chr10 (13339979-13339720)
	587-805, gnl\|tetNig1\|chr2 (4702377-4702135)
	587-805, gnl\|xenTro1\|scaffold_254 (691333-691570)

	1002-1260, gnl\|bosTau2\|chr25 (189503-189755)
	1002-1260, gnl\|Hg17\|chr16 (2587640-2587907)
	1002-1260, gnl\|Mm7\|chr17 (22260091-22259823)