Non-Coding RNA Search

Ss1.1-Mixn-0019o22.5

Sequence:


               
               TGCAAGTGTATAAGATGATATCTGTTCTGTCTTTTGGAAAATACAATCGAAGGGCTTTAC
TCCAGAGGGCAGAAGGATTTCCTGAGCTGGTTGCCTGCATCCTCGATCTTCTCTGGCCCA
TGTTTTGACTGTAAGATCATCGGTCTGGGGTCTGAAGAAGACAAAGTGGGAAAGAGACCT
GGAAGGTACTGGCTCCGTTTTTAGGAAAAGTCTCTTGGAGTTGCCACAATGCTGGCTTGC
ACAACTGAACAGGTATGTCCACGTGGGACACCTGGGGGCTGCTAAATCACCCCTCTGGGG
TGGAAGCTGCTGGAAGGCAGGCCTGAGCCATTCACTGCGGACAGTCAGAGTGGGCCTGGC
CTCTGGGGTCTCCATGTCTTGCCATCTCATCCGGGGCTTCTGTGAAAGCTCCCCAGGGGC
CTCATGTCCTCCCCTAGAGCCTGAGTGGTGTGAGGTGACAGGTCTCTCTCCACTGCCTCT
TTCTGGTTTAAAACACAAATGGTGCTTGCTAAGCGAAGGCAGACCCTTCCCTCGGACTGA
CAAGTTGTGACTGCTGAATGCCTGCGTGGGAAGAGACGGACCTCTGCGTCCCCATTGGTG
GCTGAGATGAGAGTGCGGGCAGACGGCGCCTGGCACAAGCCTGGCACACAGTAGGCGCCC
ACTGAGTACCAGTTGAACTGAAGGATGAGAGCAATGGCCCCCAGTCGGAGAGCTGAAAGC
CATGACCCAGCGACCGCCCCTTCCTTCCGGTCTCTAAGCGCTCTCGCGGCTGGGTCAGCC
ACAACTCTGCGTTGCCGGAGTGTGAAGCACAAGGAAGGAGGAGAGACAGGGTAAAAGGCA
GATGTCAGCGACACTAAGGGCTTCCTCATGGGAGGGCATGAGGCTCCACTCATTGTCTTG
TGACTTCCATCCCTGCTGAATGGGGCTGCAAGGCCAAGTCTCCTTAGGGGGAGAGGTCCT
TACCTCCGATCCAGTTAGAGCAATAACCACTTTTTAAATGTAAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAAGTGTATAAGATGATATCTGTTCTGTCTTTTGGAAAATACAATCGAAGGGCTTTAC
TCCAGAGGGCAGAAGGATTTCCTGAGCTGGTTGCCTGCATCCTCGATCTTCTCTGGCCCA
TGTTTTGACTGTAAGATCATCGGTCTGGGGTCTGAAGAAGACAAAGTGGGAAAGAGACCT
GGAAGGTACTGGCTCCGTTTTTAGGAAAAGTCTCTTGGAGTTGCCACAATGCTGGCTTGC
ACAACTGAACAGGTATGTCCACGTGGGACACCTGGGGGCTGCTAAATCACCCCTCTGGGG
TGGAAGCTGCTGGAAGGCAGGCCTGAGCCATTCACTGCGGACAGTCAGAGTGGGCCTGGC
CTCTGGGGTCTCCATGTCTTGCCATCTCATCCGGGGCTTCTGTGAAAGCTCCCCAGGGGC
CTCATGTCCTCCCCTAGAGCCTGAGTGGTGTGAGGTGACAGGTCTCTCTCCACTGCCTCT
TTCTGGTTTAAAACACAAATGGTGCTTGCTAAGCGAAGGCAGACCCTTCCCTCGGACTGA
CAAGTTGTGACTGCTGAATGCCTGCGTGGGAAGAGACGGACCTCTGCGTCCCCATTGGTG
GCTGAGATGAGAGTGCGGGCAGACGGCGCCTGGCACAAGCCTGGCACACAGTAGGCGCCC
ACTGAGTACCAGTTGAACTGAAGGATGAGAGCAATGGCCCCCAGTCGGAGAGCTGAAAGC
CATGACCCAGCGACCGCCCCTTCCTTCCGGTCTCTAAGCGCTCTCGCGGCTGGGTCAGCC
ACAACTCTGCGTTGCCGGAGTGTGAAGCACAAGGAAGGAGGAGAGACAGGGTAAAAGGCA
GATGTCAGCGACACTAAGGGCTTCCTCATGGGAGGGCATGAGGCTCCACTCATTGTCTTG
TGACTTCCATCCCTGCTGAATGGGGCTGCAAGGCCAAGTCTCCTTAGGGGGAGAGGTCCT
TACCTCCGATCCAGTTAGAGCAATAACCACTTTTTAAATGTAAAATAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               108-222, - strand, RNAz p=0.559138
               

               
               614-810, - strand, RNAz p=0.888152
               

               
               851-970, + strand, RNAz p=0.867367

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-222, - strand, RNAz p=0.559138
               

               
               614-810, - strand, RNAz p=0.888152
               

               
               851-970, + strand, RNAz p=0.867367

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_153756, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_153756, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1008, gnl|bosTau2|chr2 (74130255-74129257)
               

               
               1-1008, gnl|Hg17|chr1 (32997963-32996981)
               

               
               1-1008, gnl|Mm7|chr4 (128588252-128589221)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr2 (74130255-74129257)
               

               
               1-1008, gnl|Hg17|chr1 (32997963-32996981)
               

               
               1-1008, gnl|Mm7|chr4 (128588252-128589221)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	108-222, - strand, RNAz p=0.559138
	614-810, - strand, RNAz p=0.888152
	851-970, + strand, RNAz p=0.867367

	1-1008, gnl\|bosTau2\|chr2 (74130255-74129257)
	1-1008, gnl\|Hg17\|chr1 (32997963-32996981)
	1-1008, gnl\|Mm7\|chr4 (128588252-128589221)