Ss1.1-Mixn-0019p18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTTCCTAATGAAGCAACAGTCACTCCTTGCCAAGCAGCCAGCCACGCCCACAAGAGCC TCCGAATCCCCTGCAAGAGGACCCTCTGGCTCTCCAAGAACCCAGGGCCGGGGAGGGCCA GCCAGTGTGCCTAGTGCCTCCCCAGGCACGTCAGTCAAGAAGCCGGACCCAAACATCAAA AATAATGCAGCAAGTGAAGGGGTGTTGGCCAGCTTCTTCAACAGTCTGTTGAGTAAAAAA ACAGGCTCACCTGGAAGCCCTGGTGCTGGTGGCGTGCAGAGCACAGCTAAGAAGTCAGGA CAAAAGACTGTGTTGACAAATGTTCAGGAAGAACTGGATAGAATGACTCGAAAACCAGAC TCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGATCCTCCTTAAAAAGTGCATAT GTAAAATGACCAAATAACTATGTATATTGATCTGCTCTAAGACCAGGATTTTTCTGATAT GGCACATGCTATCAGTTTTTTGGGGCAGGGGAGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTTCCTAATGAAGCAACAGTCACTCCTTGCCAAGCAGCCAGCCACGCCCACAAGAGCC TCCGAATCCCCTGCAAGAGGACCCTCTGGCTCTCCAAGAACCCAGGGCCGGGGAGGGCCA GCCAGTGTGCCTAGTGCCTCCCCAGGCACGTCAGTCAAGAAGCCGGACCCAAACATCAAA AATAATGCAGCAAGTGAAGGGGTGTTGGCCAGCTTCTTCAACAGTCTGTTGAGTAAAAAA ACAGGCTCACCTGGAAGCCCTGGTGCTGGTGGCGTGCAGAGCACAGCTAAGAAGTCAGGA CAAAAGACTGTGTTGACAAATGTTCAGGAAGAACTGGATAGAATGACTCGAAAACCAGAC TCCATGGTAACAAACTCTTCAACAGAAAATGAAGCCTGATCCTCCTTAAAAAGTGCATAT GTAAAATGACCAAATAACTATGTATATTGATCTGCTCTAAGACCAGGATTTTTCTGATAT GGCACATGCTATCAGTTTTTTGGGGCAGGGGAGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 64-184, - strand, RNAz p=0.829995 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 64-184, - strand, RNAz p=0.829995 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-272, gnl|bosTau2|chr18 (13651386-13651109) | |
| 1-272, gnl|Hg17|chr3 (32546977-32545007) | |
| 1-272, gnl|Mm7|chr9 (114368998-114372888) | |
| 64-184, gnl|bosTau2|chr18 (26699283-26699163) | |
| 64-184, gnl|canFam2|chr5 (85568302-85568170) | |
| 64-184, gnl|danRer3|chr7 (36200403-36200535) | |
| 64-184, gnl|dasNov1|scaffold_11588 (42443-42311) | |
| 64-184, gnl|echTel1|scaffold_295472 (197-65) | |
| 64-184, gnl|fr1|chrUn (209159182-209159044) | |
| 64-184, gnl|galGal2|chr11 (11679502-11679374) | |
| 64-184, gnl|hg17|chr16 (65319081-65319213) | |
| 64-184, gnl|Hg17|chr16 (65319209-65319089) | |
| 64-184, gnl|loxAfr1|scaffold_13417 (4413-4546) | |
| 64-184, gnl|mm7|chr8 (103022405-103022537) | |
| 64-184, gnl|Mm7|chr8 (103022533-103022413) | |
| 64-184, gnl|monDom2|scaffold_23 (20868329-20868197) | |
| 64-184, gnl|oryCun1|scaffold_39935 (860-959) | |
| 64-184, gnl|panTro1|chr18 (59559302-59559434) | |
| 64-184, gnl|rheMac2|chr20 (64991351-64991483) | |
| 64-184, gnl|rn3|chr19 (505411-505279) | |
| 64-184, gnl|tetNig1|chr5 (7820772-7820902) | |
| 64-184, gnl|xenTro1|scaffold_13 (1803770-1803895) | |
| 297-516, gnl|bosTau2|chr18 (26696981-26696762) | |
| 297-516, gnl|Hg17|chr16 (65315228-65315011) | |
| 297-516, gnl|Mm7|chr8 (103019987-103019770) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-272, gnl|bosTau2|chr18 (13651386-13651109) | |
| 1-272, gnl|Hg17|chr3 (32546977-32545007) | |
| 1-272, gnl|Mm7|chr9 (114368998-114372888) | |
| 64-184, gnl|bosTau2|chr18 (26699283-26699163) | |
| 64-184, gnl|canFam2|chr5 (85568302-85568170) | |
| 64-184, gnl|danRer3|chr7 (36200403-36200535) | |
| 64-184, gnl|dasNov1|scaffold_11588 (42443-42311) | |
| 64-184, gnl|echTel1|scaffold_295472 (197-65) | |
| 64-184, gnl|fr1|chrUn (209159182-209159044) | |
| 64-184, gnl|galGal2|chr11 (11679502-11679374) | |
| 64-184, gnl|hg17|chr16 (65319081-65319213) | |
| 64-184, gnl|Hg17|chr16 (65319209-65319089) | |
| 64-184, gnl|loxAfr1|scaffold_13417 (4413-4546) | |
| 64-184, gnl|mm7|chr8 (103022405-103022537) | |
| 64-184, gnl|Mm7|chr8 (103022533-103022413) | |
| 64-184, gnl|monDom2|scaffold_23 (20868329-20868197) | |
| 64-184, gnl|oryCun1|scaffold_39935 (860-959) | |
| 64-184, gnl|panTro1|chr18 (59559302-59559434) | |
| 64-184, gnl|rheMac2|chr20 (64991351-64991483) | |
| 64-184, gnl|rn3|chr19 (505411-505279) | |
| 64-184, gnl|tetNig1|chr5 (7820772-7820902) | |
| 64-184, gnl|xenTro1|scaffold_13 (1803770-1803895) | |
| 297-516, gnl|bosTau2|chr18 (26696981-26696762) | |
| 297-516, gnl|Hg17|chr16 (65315228-65315011) | |
| 297-516, gnl|Mm7|chr8 (103019987-103019770) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| sug (0.127291) | |
| thg (0.126791) |