Non-Coding RNA Search

Ss1.1-Mixn-0019p21.5

Sequence:


               
               TGAACAAACCCGGGAGTCCATGGAAAGCCCAAATGCTGACCTCCAGATGAGGGCATCGGG
GAGGCCCTTAGTGTGGATAGACGCTGCTCCGTTCCCCATCTGACCTGGCACTCACTCGAT
GCTTGGAGACTGGGGGAAGGCCCCAGAGGTAGTTAGCCTCTTAGTAGAATCTGTTTAGGA
ACAGCCCCTGCTTCAGGTTATACAGCTCACAAAGCCCCCGGCTACAGCTTGAAGGGGATG
GGTGGGGCACGTGAAGGGGCGCTGCCTTCTCTCTCACCCACAGCAGGTGTCCTGCCATGG
AGGCAGAGGTCGCCGTGGTGGTGGAGCGCCATAGGGTCAAGCTCTTCTTTGCATGAAGCA
ATGTTAGTGTGATACCCTTTCCCTCTTGCTTTGTACTTCCTTTCTCGAATCCTTCCCACC
TTTCTCGGTCCTGGGTTCTGCCCAGGGAGGTTTCTACTCAGTCTTCTTCTGCAGTTTGTC
TCTAGGAGATGGAGAGGCTCTCCCTTCCCCCTGCTTCGCCCCAGCAGAGCCAGCAGGGTG
TCCCTGAACTCCTGTTGTTCTCCCTTCCCCAACAAAGAGTTTCTATCCTCTTTGATCAAA
GCTCATAGTTTTTATGGATCAGGAGAAAATGCAGGCCCTCAGAAACTAATCCCTGCAGAA
GGGTTCCTTGGGCCATGCTTTGGGTTTTCTGCTCTTCCTGTTTTTATTCTACTCTCTTTT
TTTCTGCCCTCCTGTGCTCTGGGCCTAAGCTCAGTACAGATGAGTGTTCAGGGCAGCTCC
TAGGCCTGGACAGCTCTCGGGGAGGAGTTAGATAAATGTTCAACATCCCCATGCCTGGCC
CATCTAGTTTCATCCTTTAGTTACCCAGGCCAGTAGCTTTGGGTTCTCCCCTCTTGTAGC
TCCAAATCCAATGCTTGGAGCAGTGGTATAGGGCTCTTAATAGGAGGTGACGCCTCTCTC
TCATTTCAAAATTTGCCAACTTAGGGCCTGGCTCTGGAAAGCAGTTTTCTTAAAGTGGAC
TGCATCCTGGGTGATCTGAAATCTCCAGACCTAGAGGGACAGCTATGCCCTCCCTTCTCT
CCTCTGTTCTCTGGCTAAACTGATTTAGCAGTAGAAACCATTTGGTGTGTTGGACTCTAG
CATACCACTAGGTTCCTCCCAGGTTCCCTGTGTCATGTTAGCTTCCTTTTGGAGGGAGGG
TGATGTGGCTGAATACTCAAGAGAGCAGAGGCGGCGGGTGTGCTTCTAAAGAAGCTCCCC
ATCTTCCGATTCCTCCTCCGACCTTCCTCTTCCCCCAGGTCTCACTGAGACGGGCAGCGT
CAGCTCACTGCTCAGCAGTAATGGAGGCTGTGGGAGAGGTTCAGGGCTCTGGGGAAGAAC
AGAGTCAAGAGGGGAGTGATATGGGGTGGAGGCACTTAGCCAACCGCTAAACCTGGACAC
CAATTTTATATCATGCCCCCTTTTTAAGCTGGTGAGCTGGGCTTCAGTTTTCCCCAGGCC
ATGCACACTTTTAATTTATTTGAGAGAAACTCTAATTGTATTTTCACTGCAGTATCTTGT
ATTTTTTATTTGTGATTTAAGAAATGTGAAGAGAAAATACACAGACACACAATGGCTAAC
AGTGTTTCTTTCATTCCTTGTTCTAGAGCTAACCACTCTAAACTTGTTTGGTAATGTCAC
TTAGTGTAATTAATTGTAACATATTCTTTTAAATAAATTGATTTATTGATGAAACTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAACAAACCCGGGAGTCCATGGAAAGCCCAAATGCTGACCTCCAGATGAGGGCATCGGG
GAGGCCCTTAGTGTGGATAGACGCTGCTCCGTTCCCCATCTGACCTGGCACTCACTCGAT
GCTTGGAGACTGGGGGAAGGCCCCAGAGGTAGTTAGCCTCTTAGTAGAATCTGTTTAGGA
ACAGCCCCTGCTTCAGGTTATACAGCTCACAAAGCCCCCGGCTACAGCTTGAAGGGGATG
GGTGGGGCACGTGAAGGGGCGCTGCCTTCTCTCTCACCCACAGCAGGTGTCCTGCCATGG
AGGCAGAGGTCGCCGTGGTGGTGGAGCGCCATAGGGTCAAGCTCTTCTTTGCATGAAGCA
ATGTTAGTGTGATACCCTTTCCCTCTTGCTTTGTACTTCCTTTCTCGAATCCTTCCCACC
TTTCTCGGTCCTGGGTTCTGCCCAGGGAGGTTTCTACTCAGTCTTCTTCTGCAGTTTGTC
TCTAGGAGATGGAGAGGCTCTCCCTTCCCCCTGCTTCGCCCCAGCAGAGCCAGCAGGGTG
TCCCTGAACTCCTGTTGTTCTCCCTTCCCCAACAAAGAGTTTCTATCCTCTTTGATCAAA
GCTCATAGTTTTTATGGATCAGGAGAAAATGCAGGCCCTCAGAAACTAATCCCTGCAGAA
GGGTTCCTTGGGCCATGCTTTGGGTTTTCTGCTCTTCCTGTTTTTATTCTACTCTCTTTT
TTTCTGCCCTCCTGTGCTCTGGGCCTAAGCTCAGTACAGATGAGTGTTCAGGGCAGCTCC
TAGGCCTGGACAGCTCTCGGGGAGGAGTTAGATAAATGTTCAACATCCCCATGCCTGGCC
CATCTAGTTTCATCCTTTAGTTACCCAGGCCAGTAGCTTTGGGTTCTCCCCTCTTGTAGC
TCCAAATCCAATGCTTGGAGCAGTGGTATAGGGCTCTTAATAGGAGGTGACGCCTCTCTC
TCATTTCAAAATTTGCCAACTTAGGGCCTGGCTCTGGAAAGCAGTTTTCTTAAAGTGGAC
TGCATCCTGGGTGATCTGAAATCTCCAGACCTAGAGGGACAGCTATGCCCTCCCTTCTCT
CCTCTGTTCTCTGGCTAAACTGATTTAGCAGTAGAAACCATTTGGTGTGTTGGACTCTAG
CATACCACTAGGTTCCTCCCAGGTTCCCTGTGTCATGTTAGCTTCCTTTTGGAGGGAGGG
TGATGTGGCTGAATACTCAAGAGAGCAGAGGCGGCGGGTGTGCTTCTAAAGAAGCTCCCC
ATCTTCCGATTCCTCCTCCGACCTTCCTCTTCCCCCAGGTCTCACTGAGACGGGCAGCGT
CAGCTCACTGCTCAGCAGTAATGGAGGCTGTGGGAGAGGTTCAGGGCTCTGGGGAAGAAC
AGAGTCAAGAGGGGAGTGATATGGGGTGGAGGCACTTAGCCAACCGCTAAACCTGGACAC
CAATTTTATATCATGCCCCCTTTTTAAGCTGGTGAGCTGGGCTTCAGTTTTCCCCAGGCC
ATGCACACTTTTAATTTATTTGAGAGAAACTCTAATTGTATTTTCACTGCAGTATCTTGT
ATTTTTTATTTGTGATTTAAGAAATGTGAAGAGAAAATACACAGACACACAATGGCTAAC
AGTGTTTCTTTCATTCCTTGTTCTAGAGCTAACCACTCTAAACTTGTTTGGTAATGTCAC
TTAGTGTAATTAATTGTAACATATTCTTTTAAATAAATTGATTTATTGATGAAACTAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1345-1682, gnl|bosTau2|chr23 (37994094-37994433)
               

               
               1345-1682, gnl|Hg17|chr1 (148484238-148484575)
               

               
               1345-1682, gnl|Mm7|chr3 (94371870-94371548)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1345-1682, gnl|bosTau2|chr23 (37994094-37994433)
               

               
               1345-1682, gnl|Hg17|chr1 (148484238-148484575)
               

               
               1345-1682, gnl|Mm7|chr3 (94371870-94371548)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               pro (0.512033)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1345-1682, gnl\|bosTau2\|chr23 (37994094-37994433)
	1345-1682, gnl\|Hg17\|chr1 (148484238-148484575)
	1345-1682, gnl\|Mm7\|chr3 (94371870-94371548)

	pro (0.512033)
	cut (0.169924)
	fhi (0.169578)
	cje (0.165235)
	isp (0.150376)
	nmm (0.132802)
	eru (0.120048)
	cty (0.10408)
	eje (0.0988338)