Ss1.1-Mixn-0020a20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCATTGCTGTAGTGTGTCTGTCAGGGAGCCCTACCTGCTGGATGATTGCAGTGATTTA GTTCTCTTGAGAGGCTTTACAGTTGAAATTATATTGAAGCTGCTGTTCTTTCCAGACTGA GGAAGCACAGCCTAGCACTAGCACAAGTACACAGGCCCCAGCCGCTTCCCCCACTGGTGT AGTTCCTGGTACCAAATATGGTAAGCTAAACCTCATGGGGCTATTGACAGTTGGAAGGTC CTAGTTGTTGTCTCTGTTTAATAAGAGTTCCTCTCCCTTTGGGGGTGTCAGAGGGACACT TGGGGATGTGAGAGAAGAAGATCATTAAGGCCTGCTGCATCTCAGTGGCTTAGAATTGGA AGTAAAGCCAATTTCTTACCTGCAAATGACTGTGTGCTGGATCTTGTTTTTGCAGCAGTG CCTGACACATCCACTTACCAGTATGATGAATCTTCAGGATATTATTATGATCCAACCACA GGGCTGTATTATGACCCCAACTCACAGTACTACTACAATTCCTTAACTCAGCAGTACCTG TACTGGGATGGAGAAAAGGAGACCTATGTGCCGGCCGCGGAGTCTAACTCCCACCAGCAG ACGGGCCTCCCTCCTGCGAAAGAGGGGAAGGAAAAGAAAGAGAAACCCAAGAGCAAAACA GCCCAGCAGATTGCCAAAGACATGGAACGCTGGGCTAAGAGTTTAAACAAGCAGAAAGAA AATTTTAAAAACAGCTTTCAACCTGTCAATTCCTTGAGGGAAGAAGAAAGGAGAGAATCT GCTGCAGCAGATGCTGGGTTTGCTCTCTTTGAGAAGAAGGGAGCCTTAGCAGAAAGGCAG CAGCTCATCCCTGAATTGGTGCGAAATGGAGACGAGGAAAATCCCCTCAAAAGGGGTCTG GTTGCTGCTTATAGTGGTGACAGTGACAATGAAGAGGAGCTAGTGGAGAGACTTGAGAGT GAGGAAGAAAAGCTGGCCGACTGGAAGAAGATGGCCTGCTTGCTCTGCCGGCGCCAGTTC CCAAACAAAGACGCCCTGGTCAGGCACCAGCAGCTCTCAGACCTACACAAGCAAAACATG GACATCTACCGACGATCCAGATTGAGTGAGCAGGAGCTGGAAGCCTTGGAGCTGAGGGAG AGAGAGATGAAATACCGGGATCGAGCTGCAGAAAGACGAGAGAAGTATGGCATCCCAGAA CCTCCAGAACCCAAGCGCAAGAAGCAGTTTGATGCTGGCACTGTGAATTACGAGCAGCCC ACCAAAGATGGCATTGACCACAGTAACATTGGCAACAAGATGCTGCAGGCCATGGGTTGG AGGGAAGGCTCGGGTTTGGGAAGAAAGTGTCAAGGCATCACAGCCCCCATTGAGGCTCAA GTCCGGCTAAAAGGAGCTGGCCTAGGAGCCAAAGGCAGCGCATATGGACTCACTGGTGCA GATTCCTACAAAGATGCTGTACGGAAGGCCATGTTTGCCCGGTTCACTGAGATGGAGTGA GACTCAGAGGGGTGACAAAGAGCACGGAGTGCTCCAGCTCCTAAATTCACTCTGACCACC TTTCTCTTTAAGGGCATGCCTCATGCTGTTAATAGTTTTTAGGGTGAACCACTTCATTCT GAAAGGTTCTCCCACTTAAAGGAGTTCCCCTTGTATGAGTTATCTGGTGAATGGACTGCC TTCCTGCCAGAGGGCTTTTGAGCTGGCCAAGGGGACAGTGGGTCTTTTATACTTCTGTGT ATATAGTGTAATGTAGTGTGTTTTACATGTGTAGCCTATGTTATGATCCAGCACCCCCTT GCATTCCTAGGGGTTGTTGAGATGCCCTAGGTGGTATGTAACACCAAAGCCGCCTCTGTC ATTCGTTGTGCTGTCTTTTCTTGGCAAAAGCCTTGTGTATATTTGTACATTACACATTTG TACAGAATTTTGGAAGATTTTCAGTCTAGTTGCCAAATCTGGCTCCTTTACAAAAGAAAT ACCTTGGAAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCATTGCTGTAGTGTGTCTGTCAGGGAGCCCTACCTGCTGGATGATTGCAGTGATTTA GTTCTCTTGAGAGGCTTTACAGTTGAAATTATATTGAAGCTGCTGTTCTTTCCAGACTGA GGAAGCACAGCCTAGCACTAGCACAAGTACACAGGCCCCAGCCGCTTCCCCCACTGGTGT AGTTCCTGGTACCAAATATGGTAAGCTAAACCTCATGGGGCTATTGACAGTTGGAAGGTC CTAGTTGTTGTCTCTGTTTAATAAGAGTTCCTCTCCCTTTGGGGGTGTCAGAGGGACACT TGGGGATGTGAGAGAAGAAGATCATTAAGGCCTGCTGCATCTCAGTGGCTTAGAATTGGA AGTAAAGCCAATTTCTTACCTGCAAATGACTGTGTGCTGGATCTTGTTTTTGCAGCAGTG CCTGACACATCCACTTACCAGTATGATGAATCTTCAGGATATTATTATGATCCAACCACA GGGCTGTATTATGACCCCAACTCACAGTACTACTACAATTCCTTAACTCAGCAGTACCTG TACTGGGATGGAGAAAAGGAGACCTATGTGCCGGCCGCGGAGTCTAACTCCCACCAGCAG ACGGGCCTCCCTCCTGCGAAAGAGGGGAAGGAAAAGAAAGAGAAACCCAAGAGCAAAACA GCCCAGCAGATTGCCAAAGACATGGAACGCTGGGCTAAGAGTTTAAACAAGCAGAAAGAA AATTTTAAAAACAGCTTTCAACCTGTCAATTCCTTGAGGGAAGAAGAAAGGAGAGAATCT GCTGCAGCAGATGCTGGGTTTGCTCTCTTTGAGAAGAAGGGAGCCTTAGCAGAAAGGCAG CAGCTCATCCCTGAATTGGTGCGAAATGGAGACGAGGAAAATCCCCTCAAAAGGGGTCTG GTTGCTGCTTATAGTGGTGACAGTGACAATGAAGAGGAGCTAGTGGAGAGACTTGAGAGT GAGGAAGAAAAGCTGGCCGACTGGAAGAAGATGGCCTGCTTGCTCTGCCGGCGCCAGTTC CCAAACAAAGACGCCCTGGTCAGGCACCAGCAGCTCTCAGACCTACACAAGCAAAACATG GACATCTACCGACGATCCAGATTGAGTGAGCAGGAGCTGGAAGCCTTGGAGCTGAGGGAG AGAGAGATGAAATACCGGGATCGAGCTGCAGAAAGACGAGAGAAGTATGGCATCCCAGAA CCTCCAGAACCCAAGCGCAAGAAGCAGTTTGATGCTGGCACTGTGAATTACGAGCAGCCC ACCAAAGATGGCATTGACCACAGTAACATTGGCAACAAGATGCTGCAGGCCATGGGTTGG AGGGAAGGCTCGGGTTTGGGAAGAAAGTGTCAAGGCATCACAGCCCCCATTGAGGCTCAA GTCCGGCTAAAAGGAGCTGGCCTAGGAGCCAAAGGCAGCGCATATGGACTCACTGGTGCA GATTCCTACAAAGATGCTGTACGGAAGGCCATGTTTGCCCGGTTCACTGAGATGGAGTGA GACTCAGAGGGGTGACAAAGAGCACGGAGTGCTCCAGCTCCTAAATTCACTCTGACCACC TTTCTCTTTAAGGGCATGCCTCATGCTGTTAATAGTTTTTAGGGTGAACCACTTCATTCT GAAAGGTTCTCCCACTTAAAGGAGTTCCCCTTGTATGAGTTATCTGGTGAATGGACTGCC TTCCTGCCAGAGGGCTTTTGAGCTGGCCAAGGGGACAGTGGGTCTTTTATACTTCTGTGT ATATAGTGTAATGTAGTGTGTTTTACATGTGTAGCCTATGTTATGATCCAGCACCCCCTT GCATTCCTAGGGGTTGTTGAGATGCCCTAGGTGGTATGTAACACCAAAGCCGCCTCTGTC ATTCGTTGTGCTGTCTTTTCTTGGCAAAAGCCTTGTGTATATTTGTACATTACACATTTG TACAGAATTTTGGAAGATTTTCAGTCTAGTTGCCAAATCTGGCTCCTTTACAAAAGAAAT ACCTTGGAAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 707-1992, + strand, RNAz p=0.889787 | |
| 954-1071, - strand, RNAz p=0.713327 | |
| 1551-1705, - strand, RNAz p=0.876139 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 707-1992, + strand, RNAz p=0.889787 | |
| 954-1071, - strand, RNAz p=0.713327 | |
| 1551-1705, - strand, RNAz p=0.876139 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-507, gnl|bosTau2|chr22 (38373805-38374301) | |
| 1-507, gnl|Hg17|chr3 (50122700-50123207) | |
| 1-507, gnl|Mm7|chr9 (107481862-107481363) | |
| 668-831, gnl|bosTau2|chr22 (38376697-38376860) | |
| 668-831, gnl|Hg17|chr3 (50126385-50126545) | |
| 668-831, gnl|Mm7|chr9 (107476893-107476730) | |
| 887-1071, gnl|bosTau2|chr22 (38377786-38377970) | |
| 887-1071, gnl|Hg17|chr3 (50127860-50128044) | |
| 887-1071, gnl|Mm7|chr9 (107476022-107475838) | |
| 1145-1248, gnl|bosTau2|chr22 (38379376-38379479) | |
| 1145-1248, gnl|canFam2|chr20 (42200746-42200650) | |
| 1145-1248, gnl|danRer3|chr19 (16941563-16941664) | |
| 1145-1248, gnl|dasNov1|scaffold_41873 (45147-45048) | |
| 1145-1248, gnl|echTel1|scaffold_314205 (61939-61845) | |
| 1145-1248, gnl|fr1|chrUn (44960058-44960159) | |
| 1145-1248, gnl|galGal2|chr12 (2802325-2802421) | |
| 1145-1248, gnl|hg17|chr3 (50129507-50129603) | |
| 1145-1248, gnl|Hg17|chr3 (50129509-50129612) | |
| 1145-1248, gnl|loxAfr1|scaffold_5964 (5698-5602) | |
| 1145-1248, gnl|mm7|chr9 (107474360-107474263) | |
| 1145-1248, gnl|Mm7|chr9 (107474355-107474252) | |
| 1145-1248, gnl|monDom2|scaffold_5 (74529829-74529733) | |
| 1145-1248, gnl|oryCun1|scaffold_210732 (124249-124153) | |
| 1145-1248, gnl|panTro1|chr2 (51708538-51708634) | |
| 1145-1248, gnl|rheMac2|chr2 (86302491-86302397) | |
| 1145-1248, gnl|rn3|chr8 (113017386-113017290) | |
| 1145-1248, gnl|tetNig1|chr11 (4776708-4776607) | |
| 1145-1248, gnl|xenTro1|scaffold_189 (20039-19946) | |
| 1373-1992, gnl|bosTau2|chr22 (38380541-38381178) | |
| 1373-1992, gnl|Hg17|chr3 (50130766-50131398) | |
| 1373-1992, gnl|Mm7|chr9 (107472749-107472153) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-507, gnl|bosTau2|chr22 (38373805-38374301) | |
| 1-507, gnl|Hg17|chr3 (50122700-50123207) | |
| 1-507, gnl|Mm7|chr9 (107481862-107481363) | |
| 668-831, gnl|bosTau2|chr22 (38376697-38376860) | |
| 668-831, gnl|Hg17|chr3 (50126385-50126545) | |
| 668-831, gnl|Mm7|chr9 (107476893-107476730) | |
| 887-1071, gnl|bosTau2|chr22 (38377786-38377970) | |
| 887-1071, gnl|Hg17|chr3 (50127860-50128044) | |
| 887-1071, gnl|Mm7|chr9 (107476022-107475838) | |
| 1145-1248, gnl|bosTau2|chr22 (38379376-38379479) | |
| 1145-1248, gnl|canFam2|chr20 (42200746-42200650) | |
| 1145-1248, gnl|danRer3|chr19 (16941563-16941664) | |
| 1145-1248, gnl|dasNov1|scaffold_41873 (45147-45048) | |
| 1145-1248, gnl|echTel1|scaffold_314205 (61939-61845) | |
| 1145-1248, gnl|fr1|chrUn (44960058-44960159) | |
| 1145-1248, gnl|galGal2|chr12 (2802325-2802421) | |
| 1145-1248, gnl|hg17|chr3 (50129507-50129603) | |
| 1145-1248, gnl|Hg17|chr3 (50129509-50129612) | |
| 1145-1248, gnl|loxAfr1|scaffold_5964 (5698-5602) | |
| 1145-1248, gnl|mm7|chr9 (107474360-107474263) | |
| 1145-1248, gnl|Mm7|chr9 (107474355-107474252) | |
| 1145-1248, gnl|monDom2|scaffold_5 (74529829-74529733) | |
| 1145-1248, gnl|oryCun1|scaffold_210732 (124249-124153) | |
| 1145-1248, gnl|panTro1|chr2 (51708538-51708634) | |
| 1145-1248, gnl|rheMac2|chr2 (86302491-86302397) | |
| 1145-1248, gnl|rn3|chr8 (113017386-113017290) | |
| 1145-1248, gnl|tetNig1|chr11 (4776708-4776607) | |
| 1145-1248, gnl|xenTro1|scaffold_189 (20039-19946) | |
| 1373-1992, gnl|bosTau2|chr22 (38380541-38381178) | |
| 1373-1992, gnl|Hg17|chr3 (50130766-50131398) | |
| 1373-1992, gnl|Mm7|chr9 (107472749-107472153) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| fce (0.543183) | |
| fcc (0.39557) | |
| col (0.390016) | |
| eep (0.367692) | |
| cly (0.361925) | |
| lnt (0.284616) | |
| nbm (0.198649) | |
| sag (0.182715) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| csp (0.161186) | |
| pty (0.142714) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ldo (0.0970026) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| fcc (0.39557) | |
| col (0.390016) | |
| eep (0.367692) | |
| cly (0.361925) | |
| lnt (0.284616) | |
| nbm (0.198649) | |
| sag (0.182715) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| csp (0.161186) | |
| pty (0.142714) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ldo (0.0970026) |