Ss1.1-Mixn-0020b15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGATGGTAGTGCAATGGCCAAGAGGCGCTTCTTCCAGTATTTTGACCAACTACGACAG CTGCGCATGTGGAAAATGCAGCTTCTGGATGAAAACCATCTGTTTATCAAGTACACTAGT GAGGATGTCGTGACCCTGCGAGTCACAGACCCATCACAGGCATCTTTTTTTGTGGTGTAC AATATGGTGACAACAGAGGTGATCGCTGTGTTTGAGAATACATCAGATGAGCTCTTGGAG CTCTTTGAAAACTTCTGTGACCTTTTCCGTAATGCTACCCTGCATAGTGAAGTCCAGTTT CCCTGCTCAGCATCCAGCAACAACTTCGCAAGGCAGATCCAGCGCCGGTTTAAAGACACT ATTGTAAACGCCAAGTATGGAGGGCACACGGAGGCAGTGCGCCGGCTGCTGGGTCAGCTC CCCATCAGCGCCCAGTCTTACAGTGGTAGCCCTTACCTTGATTTGTCTCTCTTCAGCTAC GATGACAAGTGGGTGTCAGTCATGGAGCGGCCCAAGACTTGTGGCGATCACCCCATCAGG TTCTATGCCCGGGACTCTGGTCTGCTCAAGTTTGAGATTCAGGCAGGCTTACTGGGCCGC CCCATCAACCACACGGTGCGACGCCTTGTTGCCTTCACCTTCCACCCTTTCGAGCCTTTT GCTATCTCTGTGCAGAGGACTAATGCTGAATATGTTGTCAACTTCCACATGCGACACTGC TGCACGTAGGTGCCTCATCAAAGCCAGGTCATCTGGTCTTCCGAGACCCTGCTCCCTTCT TATTTCAGTGTACTGTCAGGCAGAAGCTCGGACTATGTACCTCAAGGGGGAGTGGACAGG GAGGGAGTGGGGCTCAGCCTGATGGAGTTTTTTAATCATCCACAATACAACTGCTGATTG ACTTAAAGTCCTTACCTTTTCCCTGTGGGAATGCCACCATTAACTAAGTCCACACTTTTT GTTTTATTTTGCATTTTCTTTCTATGAAGATGAGAGCATTACACCTCTGTCCCTTTCATG TGACTTCTTTGGCATTATGGTATGCAGCCGGAAGCAGGTAAATCTTGTTTACTCACGAGA ATTGTGTACATCTTTCTACATAGCCAACAGCAGGGCTGTCTTTATAAGAAAAAAATAAAT AAAGCCTGGTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGATGGTAGTGCAATGGCCAAGAGGCGCTTCTTCCAGTATTTTGACCAACTACGACAG CTGCGCATGTGGAAAATGCAGCTTCTGGATGAAAACCATCTGTTTATCAAGTACACTAGT GAGGATGTCGTGACCCTGCGAGTCACAGACCCATCACAGGCATCTTTTTTTGTGGTGTAC AATATGGTGACAACAGAGGTGATCGCTGTGTTTGAGAATACATCAGATGAGCTCTTGGAG CTCTTTGAAAACTTCTGTGACCTTTTCCGTAATGCTACCCTGCATAGTGAAGTCCAGTTT CCCTGCTCAGCATCCAGCAACAACTTCGCAAGGCAGATCCAGCGCCGGTTTAAAGACACT ATTGTAAACGCCAAGTATGGAGGGCACACGGAGGCAGTGCGCCGGCTGCTGGGTCAGCTC CCCATCAGCGCCCAGTCTTACAGTGGTAGCCCTTACCTTGATTTGTCTCTCTTCAGCTAC GATGACAAGTGGGTGTCAGTCATGGAGCGGCCCAAGACTTGTGGCGATCACCCCATCAGG TTCTATGCCCGGGACTCTGGTCTGCTCAAGTTTGAGATTCAGGCAGGCTTACTGGGCCGC CCCATCAACCACACGGTGCGACGCCTTGTTGCCTTCACCTTCCACCCTTTCGAGCCTTTT GCTATCTCTGTGCAGAGGACTAATGCTGAATATGTTGTCAACTTCCACATGCGACACTGC TGCACGTAGGTGCCTCATCAAAGCCAGGTCATCTGGTCTTCCGAGACCCTGCTCCCTTCT TATTTCAGTGTACTGTCAGGCAGAAGCTCGGACTATGTACCTCAAGGGGGAGTGGACAGG GAGGGAGTGGGGCTCAGCCTGATGGAGTTTTTTAATCATCCACAATACAACTGCTGATTG ACTTAAAGTCCTTACCTTTTCCCTGTGGGAATGCCACCATTAACTAAGTCCACACTTTTT GTTTTATTTTGCATTTTCTTTCTATGAAGATGAGAGCATTACACCTCTGTCCCTTTCATG TGACTTCTTTGGCATTATGGTATGCAGCCGGAAGCAGGTAAATCTTGTTTACTCACGAGA ATTGTGTACATCTTTCTACATAGCCAACAGCAGGGCTGTCTTTATAAGAAAAAAATAAAT AAAGCCTGGTAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 157-349, gnl|bosTau2|chr21 (14614067-14613875) | |
| 157-349, gnl|canFam2|chr3 (54616761-54616957) | |
| 157-349, gnl|danRer3|chrNA (9882976-9883174) | |
| 157-349, gnl|dasNov1|scaffold_7592 (56866-57062) | |
| 157-349, gnl|echTel1|scaffold_262861 (4396-4592) | |
| 157-349, gnl|fr1|chrUn (276922114-276922305) | |
| 157-349, gnl|galGal2|chr10 (13711449-13711250) | |
| 157-349, gnl|hg17|chr15 (86871825-86872021) | |
| 157-349, gnl|Hg17|chr15 (86872024-86871832) | |
| 157-349, gnl|loxAfr1|scaffold_22868 (33204-33017) | |
| 157-349, gnl|mm7|chr7 (74703192-74703388) | |
| 157-349, gnl|Mm7|chr7 (74703391-74703199) | |
| 157-349, gnl|monDom2|scaffold_45 (12050221-12050024) | |
| 157-349, gnl|oryCun1|scaffold_210529 (145825-146011) | |
| 157-349, gnl|panTro1|chr16 (87722463-87722659) | |
| 157-349, gnl|rheMac2|chr7 (68141325-68141521) | |
| 157-349, gnl|rn3|chr1 (134637243-134637439) | |
| 157-349, gnl|tetNig1|chrUn_random (96449660-96449852) | |
| 157-349, gnl|xenTro1|scaffold_130 (1948845-1948651) | |
| 538-771, gnl|bosTau2|chr21 (14602680-14602448) | |
| 538-771, gnl|Hg17|chr15 (86857377-86857144) | |
| 538-771, gnl|Mm7|chr7 (74691310-74691079) | |
| 881-1152, gnl|bosTau2|chr21 (14602308-14602031) | |
| 881-1152, gnl|Hg17|chr15 (86857003-86856728) | |
| 881-1152, gnl|Mm7|chr7 (74690958-74690677) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 157-349, gnl|bosTau2|chr21 (14614067-14613875) | |
| 157-349, gnl|canFam2|chr3 (54616761-54616957) | |
| 157-349, gnl|danRer3|chrNA (9882976-9883174) | |
| 157-349, gnl|dasNov1|scaffold_7592 (56866-57062) | |
| 157-349, gnl|echTel1|scaffold_262861 (4396-4592) | |
| 157-349, gnl|fr1|chrUn (276922114-276922305) | |
| 157-349, gnl|galGal2|chr10 (13711449-13711250) | |
| 157-349, gnl|hg17|chr15 (86871825-86872021) | |
| 157-349, gnl|Hg17|chr15 (86872024-86871832) | |
| 157-349, gnl|loxAfr1|scaffold_22868 (33204-33017) | |
| 157-349, gnl|mm7|chr7 (74703192-74703388) | |
| 157-349, gnl|Mm7|chr7 (74703391-74703199) | |
| 157-349, gnl|monDom2|scaffold_45 (12050221-12050024) | |
| 157-349, gnl|oryCun1|scaffold_210529 (145825-146011) | |
| 157-349, gnl|panTro1|chr16 (87722463-87722659) | |
| 157-349, gnl|rheMac2|chr7 (68141325-68141521) | |
| 157-349, gnl|rn3|chr1 (134637243-134637439) | |
| 157-349, gnl|tetNig1|chrUn_random (96449660-96449852) | |
| 157-349, gnl|xenTro1|scaffold_130 (1948845-1948651) | |
| 538-771, gnl|bosTau2|chr21 (14602680-14602448) | |
| 538-771, gnl|Hg17|chr15 (86857377-86857144) | |
| 538-771, gnl|Mm7|chr7 (74691310-74691079) | |
| 881-1152, gnl|bosTau2|chr21 (14602308-14602031) | |
| 881-1152, gnl|Hg17|chr15 (86857003-86856728) | |
| 881-1152, gnl|Mm7|chr7 (74690958-74690677) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nje (0.16592) | |
| lin (0.145603) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| lin (0.145603) | |
| jca (0.11396) | |
| cty (0.10408) |