Non-Coding RNA Search

Ss1.1-Mixn-0020c03.5

Sequence:


               
               GGGCGGAGAAGGGACGCGGCTGTAGCTGTGTGAGGCCGGTGTACAGGCGGCCTTGGGCAC
GGGCCTGCTCCCAGAGCGGCGGCGGCCGGGGTGAGGGGCCCAGCCGGGCAGCTGTGTGAA
GTCTGTGGTCAGCGTCGCCGGAGCCTACGCTCTGTGGAAGAGCAGCAGCGGCAGCCAGAG
GGATATTAGAAATGGCTACTCCCCAGTCAGTTTTCATCTTTGCCATCTGCATTTTAATGA
TAACTGAATTGATTTTGGCCTCAAAAAGTTACTATGATATCTTAGGTGTTCCAAAGTCAG
CATCAGAGCGCCAAATCAAAAAAGCCTTTCACAAGTTGGCCATGAAGTACCATCCTGACA
AAAATAAGAGCCCTGATGCTGAAGCAAAATTCAGAGAGATTGCAGAAGCATATGAAACAC
TCTCAGATGCTAATAGGCGAAAAGAGTATGATACGCTTGGACACAGTGCTTTTACTAATG
GTAAAGGACAAAAAGCTAGTGGAAGCCCTTTTGAGCAGTCATTTAACTTCAATTTTGATG
ACTTATTTAAAGACTTTGGGTTTTTTGGTCAAAACCAAAACACTCGATCCAAGAAGCATT
TTGAAAATCACTTCCAGACACGCCAGGATGGTTCCAGTAGACAAAGGCACCACTTCCAGG
AGTTTTCTTTTGGAGGTGGGTTGTTCGATGACATGTTTGAAGATATGGAAAAAATGTTTT
CTTTTACGGGTTTTGACACCACCACCAGTCGGCACACAGTACAGACTGAAAATAGATTCC
ATGGATCTAGCAAGCACTGTAGGACTGTCACTCAACGAAGAGGAAATATGGTTACTACAT
ACACTGACTGTTCAGGACAATAATTCATTCTTTTTCTGTTCTCATTAAACCCAACTAGTT
GACTCTTCTTCAATATCTTTGATTCAAAAGAATTTTCTGTGAACTGTTTTGACAAGTGCA
TGATTTCACTTAACTTGATATAGCTATTAAACATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGGAGAAGGGACGCGGCTGTAGCTGTGTGAGGCCGGTGTACAGGCGGCCTTGGGCAC
GGGCCTGCTCCCAGAGCGGCGGCGGCCGGGGTGAGGGGCCCAGCCGGGCAGCTGTGTGAA
GTCTGTGGTCAGCGTCGCCGGAGCCTACGCTCTGTGGAAGAGCAGCAGCGGCAGCCAGAG
GGATATTAGAAATGGCTACTCCCCAGTCAGTTTTCATCTTTGCCATCTGCATTTTAATGA
TAACTGAATTGATTTTGGCCTCAAAAAGTTACTATGATATCTTAGGTGTTCCAAAGTCAG
CATCAGAGCGCCAAATCAAAAAAGCCTTTCACAAGTTGGCCATGAAGTACCATCCTGACA
AAAATAAGAGCCCTGATGCTGAAGCAAAATTCAGAGAGATTGCAGAAGCATATGAAACAC
TCTCAGATGCTAATAGGCGAAAAGAGTATGATACGCTTGGACACAGTGCTTTTACTAATG
GTAAAGGACAAAAAGCTAGTGGAAGCCCTTTTGAGCAGTCATTTAACTTCAATTTTGATG
ACTTATTTAAAGACTTTGGGTTTTTTGGTCAAAACCAAAACACTCGATCCAAGAAGCATT
TTGAAAATCACTTCCAGACACGCCAGGATGGTTCCAGTAGACAAAGGCACCACTTCCAGG
AGTTTTCTTTTGGAGGTGGGTTGTTCGATGACATGTTTGAAGATATGGAAAAAATGTTTT
CTTTTACGGGTTTTGACACCACCACCAGTCGGCACACAGTACAGACTGAAAATAGATTCC
ATGGATCTAGCAAGCACTGTAGGACTGTCACTCAACGAAGAGGAAATATGGTTACTACAT
ACACTGACTGTTCAGGACAATAATTCATTCTTTTTCTGTTCTCATTAAACCCAACTAGTT
GACTCTTCTTCAATATCTTTGATTCAAAAGAATTTTCTGTGAACTGTTTTGACAAGTGCA
TGATTTCACTTAACTTGATATAGCTATTAAACATAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5D0C3_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5D0C3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               486-762, + strand, RNAz p=0.836939

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               486-762, + strand, RNAz p=0.836939

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               407-996, gnl|bosTau2|chr4 (32321699-32321108)
               

               
               407-996, gnl|Hg17|chr7 (107807292-107807882)
               

               
               407-996, gnl|Mm7|chr12 (42083391-42082797)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               407-996, gnl|bosTau2|chr4 (32321699-32321108)
               

               
               407-996, gnl|Hg17|chr7 (107807292-107807882)
               

               
               407-996, gnl|Mm7|chr12 (42083391-42082797)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               tes (1.03907)
               

               
               sug (0.381874)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.03907)
               

               
               sug (0.381874)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	407-996, gnl\|bosTau2\|chr4 (32321699-32321108)
	407-996, gnl\|Hg17\|chr7 (107807292-107807882)
	407-996, gnl\|Mm7\|chr12 (42083391-42082797)

	tes (1.03907)
	sug (0.381874)
	cte (0.29274)
	lyg (0.266205)
	pan (0.23596)
	aor (0.195274)
	sto (0.179824)
	rec (0.17307)
	mga (0.160205)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	spl (0.143184)
	pty (0.142714)
	ste (0.135208)
	pla (0.133672)
	ret (0.128733)
	thg (0.126791)
	cly (0.120642)
	pgl (0.118483)
	ecc (0.115035)
	cty (0.10408)