Ss1.1-Mixn-0020c19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAAATATCTCCCTGGACGGGGCGTTTCTACTCACTACTGGATCCTTCGTATGCTAAGA ACAACATCCCCATTATTGCTTCTGTGTCTGAGCATCAGCCTACGACCTGGTCCTCATACT ATTTTGATTTACAGCTTCTCGTCTTCATGTTTCCAGTTGGTCTCTATTACTGCTTTAGCA ACCTGTCTGATGCCCGGATTTTCATCATCATGTATGGTGTGACCAGCATGTACTTTTCAG CTGTTATGGTGCGTCTGATGCTAGTGTTGGCGCCTGTTATGTGCATTCTTTCTGGCATTG GAGTCTCCCAGGTTCTGTCCACTTACATGAAGAATTTGGACATAAGTCGACCAGATAAGA AGAGCAAGAAACAACAGGATTCTACCTACCCCATTAAGAATGAAGTGGCAAGTGGCATGA TACTGGTCATGGCTTTCTTTCTCATCACCTACACCTTTCATTCAACTTGGGTGACCAGTG AGGCCTATTCTTCTCCCTCCATTGTGCTGTCTGCTCGTGGTGGGGATGGCAGTAGGATCA TTTTTGATGACTTCCGAGAAGCGTACTATTGGCTTCGTCACAATACTCCAGAGGATGCGA AGGTCATGTCATGGTGGGATTATGGCTACCAGATTACAGCTATGGCGAATCGGACAATTT TAGTGGATAACAACACGTGGAATAATACCCATATTTCTCGAGTAGGACAGGCAATGGCAT CCACGGAAGAAAAAGCCTACGAGATCATGAGGGAGCTTGATGTTAGCTATGTGCTGGTCA TTTTTGGAGGCCTTACTGGGTATTCCTCTGATGACATCAACAAATTTCTGTGGATGGTCC GGATAGGAGGGAGCACAGATACAGGCAAACATATCAAGGAGCACGATTATTATACTCCAA CTGGGGAATTCCGTGTGGACCGCGAGGGTTCTCCAGTGCTGCTCAACTGCCTTATGTACA AGATGTGTTACTACCGCTTCGGACAGGTCTACACAGAAGCCAAGCGTCCACTAGGCTATG ATCGTGTTCGGAATGCTGAGATTGGGAATAAAGACTTTGAACTTGATGTCCTGGAGGAAG CATATACCACAGAACATTGGCTAGTCAGGATATACAAGGTGAAGGACCTGGATAATCGAG GCTTGTCAAGGACATAAATGTTACATCCAGCTCTGATCTGCTTCGCACTGAGCGCATCAC ATTTAGGGCGCTGAAGACATTTTTAAAACATGCAGTTTATAAGAACAGAATGTGATGGGA TTAGAATTATCTGGATGTTTTGCCCTGGGCAGTATAGGCTGGGCCAAATGGAATGATCTT TATAATTCTGAGCAGGTTACCAAATGAAATGTCATGGCTTTACTTTGGTCAATTAAAGGG GGGAATTTTTTTTTTAATGTGCCTTATTTGTTTTGACTTAATGACTGATTTGAGGAAGCC TAAAATTTATGTTGGGCTGGAAGAAGGACAGAAACAGACCTCATTCAAGTTCTTAGCTCC CTTAATGAGCCATGTAGGGGCATTCTGTCTTTCTCAAATCAGGAAAAACCATCAAGGTCT AGCTCAGATCCTACAAAAACAAACAATTTTGTCATTTCAAAAACTGCAGCACCTAGCACA ATGCCTTGCACATAGTGGGTGCTCAGTAAACTTATTGAATGAATAAAAGTTTGTGGGACC AGAGGAGTGCCATTTCTGTGCAGGAAGGATAGCCGTGTTGCTGTAATGTCTGTTCTCAAC ATCTCTCATCCGTAGAGGCTATCTAAGGGACAGAGGGACAGAGGTGGCTAGCCAGACCTG ATCTTACCAATATTCTTTGGGATGAGCTAGGTTTTTGTTTTTGAGCAGGAATAAATCTAC TGAGATTAAATCTTAAATTTTGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAAATATCTCCCTGGACGGGGCGTTTCTACTCACTACTGGATCCTTCGTATGCTAAGA ACAACATCCCCATTATTGCTTCTGTGTCTGAGCATCAGCCTACGACCTGGTCCTCATACT ATTTTGATTTACAGCTTCTCGTCTTCATGTTTCCAGTTGGTCTCTATTACTGCTTTAGCA ACCTGTCTGATGCCCGGATTTTCATCATCATGTATGGTGTGACCAGCATGTACTTTTCAG CTGTTATGGTGCGTCTGATGCTAGTGTTGGCGCCTGTTATGTGCATTCTTTCTGGCATTG GAGTCTCCCAGGTTCTGTCCACTTACATGAAGAATTTGGACATAAGTCGACCAGATAAGA AGAGCAAGAAACAACAGGATTCTACCTACCCCATTAAGAATGAAGTGGCAAGTGGCATGA TACTGGTCATGGCTTTCTTTCTCATCACCTACACCTTTCATTCAACTTGGGTGACCAGTG AGGCCTATTCTTCTCCCTCCATTGTGCTGTCTGCTCGTGGTGGGGATGGCAGTAGGATCA TTTTTGATGACTTCCGAGAAGCGTACTATTGGCTTCGTCACAATACTCCAGAGGATGCGA AGGTCATGTCATGGTGGGATTATGGCTACCAGATTACAGCTATGGCGAATCGGACAATTT TAGTGGATAACAACACGTGGAATAATACCCATATTTCTCGAGTAGGACAGGCAATGGCAT CCACGGAAGAAAAAGCCTACGAGATCATGAGGGAGCTTGATGTTAGCTATGTGCTGGTCA TTTTTGGAGGCCTTACTGGGTATTCCTCTGATGACATCAACAAATTTCTGTGGATGGTCC GGATAGGAGGGAGCACAGATACAGGCAAACATATCAAGGAGCACGATTATTATACTCCAA CTGGGGAATTCCGTGTGGACCGCGAGGGTTCTCCAGTGCTGCTCAACTGCCTTATGTACA AGATGTGTTACTACCGCTTCGGACAGGTCTACACAGAAGCCAAGCGTCCACTAGGCTATG ATCGTGTTCGGAATGCTGAGATTGGGAATAAAGACTTTGAACTTGATGTCCTGGAGGAAG CATATACCACAGAACATTGGCTAGTCAGGATATACAAGGTGAAGGACCTGGATAATCGAG GCTTGTCAAGGACATAAATGTTACATCCAGCTCTGATCTGCTTCGCACTGAGCGCATCAC ATTTAGGGCGCTGAAGACATTTTTAAAACATGCAGTTTATAAGAACAGAATGTGATGGGA TTAGAATTATCTGGATGTTTTGCCCTGGGCAGTATAGGCTGGGCCAAATGGAATGATCTT TATAATTCTGAGCAGGTTACCAAATGAAATGTCATGGCTTTACTTTGGTCAATTAAAGGG GGGAATTTTTTTTTTAATGTGCCTTATTTGTTTTGACTTAATGACTGATTTGAGGAAGCC TAAAATTTATGTTGGGCTGGAAGAAGGACAGAAACAGACCTCATTCAAGTTCTTAGCTCC CTTAATGAGCCATGTAGGGGCATTCTGTCTTTCTCAAATCAGGAAAAACCATCAAGGTCT AGCTCAGATCCTACAAAAACAAACAATTTTGTCATTTCAAAAACTGCAGCACCTAGCACA ATGCCTTGCACATAGTGGGTGCTCAGTAAACTTATTGAATGAATAAAAGTTTGTGGGACC AGAGGAGTGCCATTTCTGTGCAGGAAGGATAGCCGTGTTGCTGTAATGTCTGTTCTCAAC ATCTCTCATCCGTAGAGGCTATCTAAGGGACAGAGGGACAGAGGTGGCTAGCCAGACCTG ATCTTACCAATATTCTTTGGGATGAGCTAGGTTTTTGTTTTTGAGCAGGAATAAATCTAC TGAGATTAAATCTTAAATTTTGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1568-1678, - strand, RNAz p=0.521859 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1568-1678, - strand, RNAz p=0.521859 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-156, gnl|bosTau2|chr29 (22472529-22472374) | |
| 1-156, gnl|canFam2|chr5 (11928172-11927980) | |
| 1-156, gnl|danRer3|chr16 (41528025-41528200) | |
| 1-156, gnl|dasNov1|scaffold_349 (711-519) | |
| 1-156, gnl|echTel1|scaffold_191400 (6462-6270) | |
| 1-156, gnl|fr1|chrUn (253127157-253127322) | |
| 1-156, gnl|galGal2|chr24 (377655-377476) | |
| 1-156, gnl|hg17|chr11 (124984509-124984701) | |
| 1-156, gnl|Hg17|chr11 (124984539-124984694) | |
| 1-156, gnl|loxAfr1|scaffold_3639 (96776-96966) | |
| 1-156, gnl|mm7|chr9 (36674519-36674328) | |
| 1-156, gnl|Mm7|chr9 (36674488-36674333) | |
| 1-156, gnl|monDom2|scaffold_15 (11555091-11555277) | |
| 1-156, gnl|oryCun1|scaffold_208405 (35642-35460) | |
| 1-156, gnl|panTro1|chr9 (127066523-127066715) | |
| 1-156, gnl|rheMac2|chr14 (123736279-123736471) | |
| 1-156, gnl|rn3|chr8 (38007869-38007688) | |
| 1-156, gnl|tetNig1|chrUn_random (86355643-86355841) | |
| 1-156, gnl|xenTro1|scaffold_315 (25549-25369) | |
| 235-417, gnl|bosTau2|chr29 (22470608-22470426) | |
| 235-417, gnl|Hg17|chr11 (124987681-124987865) | |
| 235-417, gnl|Mm7|chr9 (36670572-36670395) | |
| 534-707, gnl|bosTau2|chr22 (4273799-4273972) | |
| 534-707, gnl|Hg17|chr3 (31641414-31641587) | |
| 534-707, gnl|Mm7|chr9 (114916576-114916403) | |
| 813-1002, gnl|bosTau2|chr29 (22465647-22465458) | |
| 813-1002, gnl|Hg17|chr11 (124993477-124993666) | |
| 813-1002, gnl|Mm7|chr9 (36661950-36661761) | |
| 1117-1843, gnl|bosTau2|chr29 (22463589-22462858) | |
| 1117-1843, gnl|Hg17|chr11 (124995875-124996526) | |
| 1117-1843, gnl|Mm7|chr9 (36659372-36658660) | |
| 1186-1681, gnl|bosTau2|chr12 (33600738-33601211) | |
| 1186-1681, gnl|Hg17|chr11 (124995944-124996444) | |
| 1186-1681, gnl|Mm7|chr9 (36659299-36658820) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-156, gnl|bosTau2|chr29 (22472529-22472374) | |
| 1-156, gnl|canFam2|chr5 (11928172-11927980) | |
| 1-156, gnl|danRer3|chr16 (41528025-41528200) | |
| 1-156, gnl|dasNov1|scaffold_349 (711-519) | |
| 1-156, gnl|echTel1|scaffold_191400 (6462-6270) | |
| 1-156, gnl|fr1|chrUn (253127157-253127322) | |
| 1-156, gnl|galGal2|chr24 (377655-377476) | |
| 1-156, gnl|hg17|chr11 (124984509-124984701) | |
| 1-156, gnl|Hg17|chr11 (124984539-124984694) | |
| 1-156, gnl|loxAfr1|scaffold_3639 (96776-96966) | |
| 1-156, gnl|mm7|chr9 (36674519-36674328) | |
| 1-156, gnl|Mm7|chr9 (36674488-36674333) | |
| 1-156, gnl|monDom2|scaffold_15 (11555091-11555277) | |
| 1-156, gnl|oryCun1|scaffold_208405 (35642-35460) | |
| 1-156, gnl|panTro1|chr9 (127066523-127066715) | |
| 1-156, gnl|rheMac2|chr14 (123736279-123736471) | |
| 1-156, gnl|rn3|chr8 (38007869-38007688) | |
| 1-156, gnl|tetNig1|chrUn_random (86355643-86355841) | |
| 1-156, gnl|xenTro1|scaffold_315 (25549-25369) | |
| 235-417, gnl|bosTau2|chr29 (22470608-22470426) | |
| 235-417, gnl|Hg17|chr11 (124987681-124987865) | |
| 235-417, gnl|Mm7|chr9 (36670572-36670395) | |
| 534-707, gnl|bosTau2|chr22 (4273799-4273972) | |
| 534-707, gnl|Hg17|chr3 (31641414-31641587) | |
| 534-707, gnl|Mm7|chr9 (114916576-114916403) | |
| 813-1002, gnl|bosTau2|chr29 (22465647-22465458) | |
| 813-1002, gnl|Hg17|chr11 (124993477-124993666) | |
| 813-1002, gnl|Mm7|chr9 (36661950-36661761) | |
| 1117-1843, gnl|bosTau2|chr29 (22463589-22462858) | |
| 1117-1843, gnl|Hg17|chr11 (124995875-124996526) | |
| 1117-1843, gnl|Mm7|chr9 (36659372-36658660) | |
| 1186-1681, gnl|bosTau2|chr12 (33600738-33601211) | |
| 1186-1681, gnl|Hg17|chr11 (124995944-124996444) | |
| 1186-1681, gnl|Mm7|chr9 (36659299-36658820) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| nje (0.33184) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |