Non-Coding RNA Search

Ss1.1-Mixn-0020d21.5

Sequence:


               
               GACCCGGCAGAGCCCCGATAGAGGGCACATGGTGTTCCGAGTGGAGGTGCTGTGCCGCGG
GCGCAGACATACCGTGCAGAGGCGCTACAGCGAGTTCCACGCGCTGCACAAGCGGATCAA
GAAACTATACAGAGTTCCCGACTTCCCCTCGAAACGCCTGCCCAACTGGAGGACCAGAGG
ATTGGAGCAGCGGCGGCAGGGCTTGGAAGCCTATATCCAGGGCATCCTATACTTGAACCA
GGATGTGCCCAAGGAACTACTGGAATTCCTGAGTCTTCGGCACTTCCCCACAGACCCCAA
GGCCAGCAGCTGGGGCTCACAGCTGTGCCACAGGCCAGTCATCAGCTTCTGCGTGGACCC
TTACATTTGCATCCCCCCCCCAGGGCCTCTGCCTGACATGGTGGTGAATGGCGTGCTCCA
GGGCCTCTACGGCTTCAGCACCAGCACAGCTAAAACCGAGCCAGAGGATGCCTGTCACCC
TGCTCCAGTGCCACTGACGCCCTGACCAGCCCAGAGGCCCTTAGGCCACCTGCCAGGACA
GTCATGTGCCTCAGTCCTGTGAAAGGGACATAGGCTGCGTTGCCCTTGGCTTGGATCCAG
AACTCACCACCCCTCCAGGCTCAGCACTGAGCTGCACGGGTAGCTGGGGCGTAGAACTCC
TGCATCTTAGAACCCAGGGGCCAGGGCGGGGACAATAGAGGAAAGGGAGAAGGTTACAGG
TGTATTTCTTCACCTCTATCGGGAGGAGGGGAGGGGACATGCAAGGTTGAGGCACAGGAG
CTGGCAAAGTTTTAGAAGCAAAGCTCCTGCTTGATGTTTTGTGTGTAGCACCTGGGGAGA
GGTGCTGGGTTTAGACTTGGGGGGGGGTGGGGCCAGAACCCAGCCCATACGCAGGTTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCGGCAGAGCCCCGATAGAGGGCACATGGTGTTCCGAGTGGAGGTGCTGTGCCGCGG
GCGCAGACATACCGTGCAGAGGCGCTACAGCGAGTTCCACGCGCTGCACAAGCGGATCAA
GAAACTATACAGAGTTCCCGACTTCCCCTCGAAACGCCTGCCCAACTGGAGGACCAGAGG
ATTGGAGCAGCGGCGGCAGGGCTTGGAAGCCTATATCCAGGGCATCCTATACTTGAACCA
GGATGTGCCCAAGGAACTACTGGAATTCCTGAGTCTTCGGCACTTCCCCACAGACCCCAA
GGCCAGCAGCTGGGGCTCACAGCTGTGCCACAGGCCAGTCATCAGCTTCTGCGTGGACCC
TTACATTTGCATCCCCCCCCCAGGGCCTCTGCCTGACATGGTGGTGAATGGCGTGCTCCA
GGGCCTCTACGGCTTCAGCACCAGCACAGCTAAAACCGAGCCAGAGGATGCCTGTCACCC
TGCTCCAGTGCCACTGACGCCCTGACCAGCCCAGAGGCCCTTAGGCCACCTGCCAGGACA
GTCATGTGCCTCAGTCCTGTGAAAGGGACATAGGCTGCGTTGCCCTTGGCTTGGATCCAG
AACTCACCACCCCTCCAGGCTCAGCACTGAGCTGCACGGGTAGCTGGGGCGTAGAACTCC
TGCATCTTAGAACCCAGGGGCCAGGGCGGGGACAATAGAGGAAAGGGAGAAGGTTACAGG
TGTATTTCTTCACCTCTATCGGGAGGAGGGGAGGGGACATGCAAGGTTGAGGCACAGGAG
CTGGCAAAGTTTTAGAAGCAAAGCTCCTGCTTGATGTTTTGTGTGTAGCACCTGGGGAGA
GGTGCTGGGTTTAGACTTGGGGGGGGGTGGGGCCAGAACCCAGCCCATACGCAGGTTATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|10436261|dbj|BAB14776.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|10436261|dbj|BAB14776.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               237-334, + strand, RNAz p=0.977843
               

               
               416-530, - strand, RNAz p=0.929699

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-334, + strand, RNAz p=0.977843
               

               
               416-530, - strand, RNAz p=0.929699

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               216-334, gnl|bosTau2|chr10 (30146287-30146407)
               

               
               216-334, gnl|canFam2|chr30 (31648248-31648443)
               

               
               216-334, gnl|dasNov1|scaffold_15973 (10156-9962)
               

               
               216-334, gnl|echTel1|scaffold_317194 (90578-90399)
               

               
               216-334, gnl|galGal2|chr10 (1360299-1360454)
               

               
               216-334, gnl|hg17|chr15 (62232480-62232642)
               

               
               216-334, gnl|Hg17|chr15 (62232493-62232596)
               

               
               216-334, gnl|loxAfr1|scaffold_41679 (20395-20593)
               

               
               216-334, gnl|mm7|chr9 (66097884-66097725)
               

               
               216-334, gnl|Mm7|chr9 (66097867-66097752)
               

               
               216-334, gnl|monDom2|scaffold_12 (49336060-49335854)
               

               
               216-334, gnl|panTro1|chr16 (62695597-62695759)
               

               
               216-334, gnl|rheMac2|chr7 (42547072-42547234)
               

               
               216-334, gnl|rn3|chr8 (70369888-70369717)
               


               
               379-530, gnl|bosTau2|chr10 (30147359-30147508)
               

               
               379-530, gnl|Hg17|chr15 (62233632-62233803)
               

               
               379-530, gnl|Mm7|chr9 (66096865-66096720)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               216-334, gnl|bosTau2|chr10 (30146287-30146407)
               

               
               216-334, gnl|canFam2|chr30 (31648248-31648443)
               

               
               216-334, gnl|dasNov1|scaffold_15973 (10156-9962)
               

               
               216-334, gnl|echTel1|scaffold_317194 (90578-90399)
               

               
               216-334, gnl|galGal2|chr10 (1360299-1360454)
               

               
               216-334, gnl|hg17|chr15 (62232480-62232642)
               

               
               216-334, gnl|Hg17|chr15 (62232493-62232596)
               

               
               216-334, gnl|loxAfr1|scaffold_41679 (20395-20593)
               

               
               216-334, gnl|mm7|chr9 (66097884-66097725)
               

               
               216-334, gnl|Mm7|chr9 (66097867-66097752)
               

               
               216-334, gnl|monDom2|scaffold_12 (49336060-49335854)
               

               
               216-334, gnl|panTro1|chr16 (62695597-62695759)
               

               
               216-334, gnl|rheMac2|chr7 (42547072-42547234)
               

               
               216-334, gnl|rn3|chr8 (70369888-70369717)
               


               
               379-530, gnl|bosTau2|chr10 (30147359-30147508)
               

               
               379-530, gnl|Hg17|chr15 (62233632-62233803)
               

               
               379-530, gnl|Mm7|chr9 (66096865-66096720)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               nbm (0.397298)
               

               
               ill (0.175593)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.397298)
               

               
               ill (0.175593)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

	237-334, + strand, RNAz p=0.977843
	416-530, - strand, RNAz p=0.929699

	216-334, gnl\|bosTau2\|chr10 (30146287-30146407)
	216-334, gnl\|canFam2\|chr30 (31648248-31648443)
	216-334, gnl\|dasNov1\|scaffold_15973 (10156-9962)
	216-334, gnl\|echTel1\|scaffold_317194 (90578-90399)
	216-334, gnl\|galGal2\|chr10 (1360299-1360454)
	216-334, gnl\|hg17\|chr15 (62232480-62232642)
	216-334, gnl\|Hg17\|chr15 (62232493-62232596)
	216-334, gnl\|loxAfr1\|scaffold_41679 (20395-20593)
	216-334, gnl\|mm7\|chr9 (66097884-66097725)
	216-334, gnl\|Mm7\|chr9 (66097867-66097752)
	216-334, gnl\|monDom2\|scaffold_12 (49336060-49335854)
	216-334, gnl\|panTro1\|chr16 (62695597-62695759)
	216-334, gnl\|rheMac2\|chr7 (42547072-42547234)
	216-334, gnl\|rn3\|chr8 (70369888-70369717)

	379-530, gnl\|bosTau2\|chr10 (30147359-30147508)
	379-530, gnl\|Hg17\|chr15 (62233632-62233803)
	379-530, gnl\|Mm7\|chr9 (66096865-66096720)