Non-Coding RNA Search

Ss1.1-Mixn-0020e16.5.5

Sequence:


               
               TATGGGTGTGCAGATAAATGGTTTTTTTTTTTTTTTTTTTCCTAAGAGAGAAAACCATTC
TGGTCACTGGGAGCCAAATTTGAGACGGTAGTCTGGTTAGAAATAAGGATCTCTGGAGTT
CCCACTGTGGCGCAGTGGGTTAAGATTCCCACTGCAGCGGCTTGGGCCACTGTGGAGGTG
CAGGTTCGATCCCCACCCATGTGCAGGGGGTTAAAGGATCTAGAGTTGTTGCAACTACGG
CTTGGGATTCATTCCCCAGCCCTGGTGAAAACTTCCATATGCTATGGGTGTGGCCATTAA
GAAAAAAAAAAAAAAGGATGTCCTTCTGAGTGGGGTGGGGGTGGGGTGCATGGAAAGTTA
GCTATTTGGGGCTGTTCTTCCCTCACTACCACTTCAGGGCTTCTCTGTGCCCAGCCCACC
CTTCTGGGGTGGTGGTGGGGCAACGCTGGTTGTTTAACAGGTGGCAGCAGGAGCTGCCAT
CTGATCCGTGGGGCTTTGGTTTAAAAAGATACACATGTACTTACACACACAGGGGTCTGG
AAATCTGAGTTGGCTGGTCAACTTGAGCATGTTACTGACAAGGGGGTATTGGGGTTATTT
TCCGGTGGCACTAGCATGTCACTAAAGCAGGCCTTTTGATATATTAAAAAAATTTTTAAA
GCAAAACAGAAGTTTAGATTTTAATCGTATTTGTAGGGTTTCTAAGTCTTTGTTTTACAG
AATTGCTTGTTTGCTCCAGCAGTCTCCTTCCTCTCTGCTCTAGGAGGAAGTGGGTCTTGC
CTGGAGTCCACACACTTGTAATTTTGTATCCTGGTGTCTAGTCTCTGAGTGTGAAGTAAT
CCCTTCCTTTGTTAAGATTCCTGAGGAGTTATTTTTTTCTTTTATAATAAAACCCCCACC
TTTGGTCCCTATATTTCCCCTGCTGTTTCTGCCTGTTTTTGTGTTGGCTGCGGCAGGTGG
GTTGTGGTTTTCTCTTAATGTGACTTCTAATTGCCAGACTTCTGGTTGCCACATATAGTG
TGTTCAGAGTTAGATAACTCCTCATTGTAAACAAACTGTGTTAACTGCCTGGAGCTGCTC
TTATAAATCAACCTAACATTTATAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGGGTGTGCAGATAAATGGTTTTTTTTTTTTTTTTTTTCCTAAGAGAGAAAACCATTC
TGGTCACTGGGAGCCAAATTTGAGACGGTAGTCTGGTTAGAAATAAGGATCTCTGGAGTT
CCCACTGTGGCGCAGTGGGTTAAGATTCCCACTGCAGCGGCTTGGGCCACTGTGGAGGTG
CAGGTTCGATCCCCACCCATGTGCAGGGGGTTAAAGGATCTAGAGTTGTTGCAACTACGG
CTTGGGATTCATTCCCCAGCCCTGGTGAAAACTTCCATATGCTATGGGTGTGGCCATTAA
GAAAAAAAAAAAAAAGGATGTCCTTCTGAGTGGGGTGGGGGTGGGGTGCATGGAAAGTTA
GCTATTTGGGGCTGTTCTTCCCTCACTACCACTTCAGGGCTTCTCTGTGCCCAGCCCACC
CTTCTGGGGTGGTGGTGGGGCAACGCTGGTTGTTTAACAGGTGGCAGCAGGAGCTGCCAT
CTGATCCGTGGGGCTTTGGTTTAAAAAGATACACATGTACTTACACACACAGGGGTCTGG
AAATCTGAGTTGGCTGGTCAACTTGAGCATGTTACTGACAAGGGGGTATTGGGGTTATTT
TCCGGTGGCACTAGCATGTCACTAAAGCAGGCCTTTTGATATATTAAAAAAATTTTTAAA
GCAAAACAGAAGTTTAGATTTTAATCGTATTTGTAGGGTTTCTAAGTCTTTGTTTTACAG
AATTGCTTGTTTGCTCCAGCAGTCTCCTTCCTCTCTGCTCTAGGAGGAAGTGGGTCTTGC
CTGGAGTCCACACACTTGTAATTTTGTATCCTGGTGTCTAGTCTCTGAGTGTGAAGTAAT
CCCTTCCTTTGTTAAGATTCCTGAGGAGTTATTTTTTTCTTTTATAATAAAACCCCCACC
TTTGGTCCCTATATTTCCCCTGCTGTTTCTGCCTGTTTTTGTGTTGGCTGCGGCAGGTGG
GTTGTGGTTTTCTCTTAATGTGACTTCTAATTGCCAGACTTCTGGTTGCCACATATAGTG
TGTTCAGAGTTAGATAACTCCTCATTGTAAACAAACTGTGTTAACTGCCTGGAGCTGCTC
TTATAAATCAACCTAACATTTATAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               703-819, + strand, RNAz p=0.982471

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               703-819, + strand, RNAz p=0.982471

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               558-911, gnl|bosTau2|chr2 (3745755-3745408)
               

               
               558-911, gnl|Hg17|chr11 (9935245-9934889)
               

               
               558-911, gnl|Mm7|chr1 (153869882-153870228)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               558-911, gnl|bosTau2|chr2 (3745755-3745408)
               

               
               558-911, gnl|Hg17|chr11 (9935245-9934889)
               

               
               558-911, gnl|Mm7|chr1 (153869882-153870228)

Expressed library(ies): 52 entry(ies)

More info

Expressed library(ies): 52 entry(ies)

Help | Less info


               
               spc (1.81385)
               

               
               ssp (1.76176)
               

               
               cst (1.5404)
               

               
               fat (1.47427)
               

               
               hyp (1.28553)
               

               
               fbs (0.876732)
               

               
               ldo (0.776021)
               

               
               nep (0.7357)
               

               
               jca (0.683761)
               

               
               fhi (0.678311)
               

               
               csk (0.562984)
               

               
               cmu (0.55918)
               

               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               bla (0.497389)
               

               
               tra (0.492368)
               

               
               med (0.465008)
               

               
               mas (0.42061)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               mcp (0.341297)
               

               
               vin (0.332557)
               

               
               cli (0.305623)
               

               
               isp (0.300752)
               

               
               pty (0.285429)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

Expressed library(ies): 52 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (1.81385)
               

               
               ssp (1.76176)
               

               
               cst (1.5404)
               

               
               fat (1.47427)
               

               
               hyp (1.28553)
               

               
               fbs (0.876732)
               

               
               ldo (0.776021)
               

               
               nep (0.7357)
               

               
               jca (0.683761)
               

               
               fhi (0.678311)
               

               
               csk (0.562984)
               

               
               cmu (0.55918)
               

               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               bla (0.497389)
               

               
               tra (0.492368)
               

               
               med (0.465008)
               

               
               mas (0.42061)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               mcp (0.341297)
               

               
               vin (0.332557)
               

               
               cli (0.305623)
               

               
               isp (0.300752)
               

               
               pty (0.285429)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

	558-911, gnl\|bosTau2\|chr2 (3745755-3745408)
	558-911, gnl\|Hg17\|chr11 (9935245-9934889)
	558-911, gnl\|Mm7\|chr1 (153869882-153870228)

	spc (1.81385)
	ssp (1.76176)
	cst (1.5404)
	fat (1.47427)
	hyp (1.28553)
	fbs (0.876732)
	ldo (0.776021)
	nep (0.7357)
	jca (0.683761)
	fhi (0.678311)
	csk (0.562984)
	cmu (0.55918)
	fce (0.543183)
	pro (0.512033)
	bla (0.497389)
	tra (0.492368)
	med (0.465008)
	mas (0.42061)
	fcc (0.39557)
	nlu (0.383362)
	mcp (0.341297)
	vin (0.332557)
	cli (0.305623)
	isp (0.300752)
	pty (0.285429)
	ova (0.258264)
	ret (0.257467)
	sug (0.254582)
	ese (0.253004)
	ebs (0.236602)
	tes (0.207814)
	hea (0.204499)
	aor (0.195274)
	sag (0.182715)
	ton (0.1755)
	sin (0.174948)
	rec (0.17307)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	fco (0.157208)
	bfe (0.149858)
	liv (0.146284)
	lnt (0.142308)
	hlv (0.139256)
	nca (0.136874)
	che (0.136314)
	ste (0.135208)
	ute (0.132784)
	thg (0.126791)
	cly (0.120642)
	clu (0.119646)