Non-Coding RNA Search

Ss1.1-Mixn-0020f07.5

Sequence:


               
               GTGAAACTCCCAGCCGGGCAAATTTCTGGTCCTGAAATCAAAGGCGATCTGAAAGGCTCA
GGAATAGGTTTCCATGGAGCCGCCCCCGACATCGGCATCAAAGGGCCTTCTTTTAACGTG
GCATCTCCTGAGTCAGATTTTGGTGTCCTCTTGAAGGGCCCGAAGATCAAAGGAGGTGTG
GATGTTGCAGGGGGTGTCAGCGCCACCGATATCAGCCTGGGCGAAGGGCACGTGAGCGTC
AAAGGGCCCGAGGGTGAGTGGAAGGGACCTCAGGTCTCCTCTGCTCTCCACTTGGATGCA
CCTGCCTTTGCTGGAGGACTTCATTTCTCAGGACCAAAGGGAGAAGGAGGCCAGATTGGA
CTTCAGGGTCCCGGGCTGAGCGTGTCTGGGCCTCAGGGTCACTTGGAAAGTGGATCTGGA
AAAGTAACATTCCCCAAGATGAAGATTCCCAAGTTCACCTTCTCTGGCCGCGAGCTGGTT
GGCCGAGAGGTCGGGGTGGATATCAACTTCCCTAAAGCAGAGGCCAGCATCCAGTCTGGT
GCCGGAGACGGCGAGGGTGAAGAGTCAGATGTGAAGCTGAAAAAGGCCAAAATCAAGATG
CCCAAGTTCAATTTTTCCAAACCTAAAGGGAAAGGTGGTGTCACTGGCTCACCAGAAGCA
TCCATTGCGGGCTCCAAAGGTGACCTGAAGAGCTCCAAGGCCAGTCTAGGCTCTCTGGAA
GGAGAGGCAGAGGGCGAAACATCTTCGCCCAAAGGCAAATTCTCCTTGTTCAAAAGCAAG
AAGCCGCGGCACCGCTCAAATTCCTTCAGCGACGAGAGGGAGCTCTCTGAGCCTTCCACC
CCGACGGGGACTTTGGAGTTTGAAGGTGGCGAAGTGTCGCTGGAAGGCGGGAAAGCCAAA
GCGAAGCACACAAAGCTGAAATTTGGTACCTTTGGTGGGTTGGGGTCAAAGAGCAAAGGT
CATTATGAGGTGACTGGGAGCGATGATGAGGCAGGCAAGGTGCAAGGGAGTGGCGTGTCC
TTGGCCTCTAAGAAGTCCCGACTGTCGTCATCGTCCAGCAACGACAGTGGGACCAAGGTG
GGCATCCAGCTTCCTGAGGTGGAGCTGACAGTTTCCACAAAGAAAGAGTAGCACGCTTGT
GCGTGTGCGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAACTCCCAGCCGGGCAAATTTCTGGTCCTGAAATCAAAGGCGATCTGAAAGGCTCA
GGAATAGGTTTCCATGGAGCCGCCCCCGACATCGGCATCAAAGGGCCTTCTTTTAACGTG
GCATCTCCTGAGTCAGATTTTGGTGTCCTCTTGAAGGGCCCGAAGATCAAAGGAGGTGTG
GATGTTGCAGGGGGTGTCAGCGCCACCGATATCAGCCTGGGCGAAGGGCACGTGAGCGTC
AAAGGGCCCGAGGGTGAGTGGAAGGGACCTCAGGTCTCCTCTGCTCTCCACTTGGATGCA
CCTGCCTTTGCTGGAGGACTTCATTTCTCAGGACCAAAGGGAGAAGGAGGCCAGATTGGA
CTTCAGGGTCCCGGGCTGAGCGTGTCTGGGCCTCAGGGTCACTTGGAAAGTGGATCTGGA
AAAGTAACATTCCCCAAGATGAAGATTCCCAAGTTCACCTTCTCTGGCCGCGAGCTGGTT
GGCCGAGAGGTCGGGGTGGATATCAACTTCCCTAAAGCAGAGGCCAGCATCCAGTCTGGT
GCCGGAGACGGCGAGGGTGAAGAGTCAGATGTGAAGCTGAAAAAGGCCAAAATCAAGATG
CCCAAGTTCAATTTTTCCAAACCTAAAGGGAAAGGTGGTGTCACTGGCTCACCAGAAGCA
TCCATTGCGGGCTCCAAAGGTGACCTGAAGAGCTCCAAGGCCAGTCTAGGCTCTCTGGAA
GGAGAGGCAGAGGGCGAAACATCTTCGCCCAAAGGCAAATTCTCCTTGTTCAAAAGCAAG
AAGCCGCGGCACCGCTCAAATTCCTTCAGCGACGAGAGGGAGCTCTCTGAGCCTTCCACC
CCGACGGGGACTTTGGAGTTTGAAGGTGGCGAAGTGTCGCTGGAAGGCGGGAAAGCCAAA
GCGAAGCACACAAAGCTGAAATTTGGTACCTTTGGTGGGTTGGGGTCAAAGAGCAAAGGT
CATTATGAGGTGACTGGGAGCGATGATGAGGCAGGCAAGGTGCAAGGGAGTGGCGTGTCC
TTGGCCTCTAAGAAGTCCCGACTGTCGTCATCGTCCAGCAACGACAGTGGGACCAAGGTG
GGCATCCAGCTTCCTGAGGTGGAGCTGACAGTTTCCACAAAGAAAGAGTAGCACGCTTGT
GCGTGTGCGTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61833711|ref|XP_587468.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61833711|ref|XP_587468.1|

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               80-239, - strand, RNAz p=0.803164
               

               
               320-427, - strand, RNAz p=0.781514
               

               
               668-827, - strand, RNAz p=0.912184
               

               
               1028-1147, + strand, RNAz p=0.820392

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.803164
               

               
               320-427, - strand, RNAz p=0.781514
               

               
               668-827, - strand, RNAz p=0.912184
               

               
               1028-1147, + strand, RNAz p=0.820392

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1147, gnl|bosTau2|chr29 (31985144-31983986)
               

               
               1-1147, gnl|Hg17|chr11 (62041934-62040776)
               

               
               1-1147, gnl|Mm7|chr19 (8697365-8698502)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1147, gnl|bosTau2|chr29 (31985144-31983986)
               

               
               1-1147, gnl|Hg17|chr11 (62041934-62040776)
               

               
               1-1147, gnl|Mm7|chr19 (8697365-8698502)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               jca (0.11396)

	80-239, - strand, RNAz p=0.803164
	320-427, - strand, RNAz p=0.781514
	668-827, - strand, RNAz p=0.912184
	1028-1147, + strand, RNAz p=0.820392

	1-1147, gnl\|bosTau2\|chr29 (31985144-31983986)
	1-1147, gnl\|Hg17\|chr11 (62041934-62040776)
	1-1147, gnl\|Mm7\|chr19 (8697365-8698502)