Ss1.1-Mixn-0020g17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTCAGGATGGAGCGACGGCACTTGGACCAGTTAGCGTCATCCAGTAGCGCCAGGGTTCC TCGCTAAAGGTGATGGTGGTGTGCTGAACCCAACCGAGCCTGGCCAATCATGGCCCTGCG GGTATTGACCCGCGCTCTTAGCTCTCTGAGCCTGACGCCCCGGATCGCTGTCGCCCCCGG CCTAAGTCTGCTCCCGGCCGTCCAGGTGACGAACAATGTCCTCCTTACGCTGCCCTCTGG CTTGATGTCGCTTCCCTGCCGCCCAATCCTTACCTCTGTGGCCCTTAGTGCTACGTCTGT GTCCTGGAAGAGTCGTACCAAGTATACCGTTATGCCAGTGAAGATGAGGAAGTCTGGGGG CCGAAACCACACAGGCCAAATCCAAGTGCATGGTATTGGTGGGGGCCACAAGCAACGTTA TCGCATGATTGACTTTCTGAGGTTCCGGCCAGAGCATGAATCCAAGCCAGGACCCTTTGA GGAGAAGGTCATTGCTGTCCGCTATGATCCCTGTAGGTCAGCAGACATAGCTCTGGTTGC TGGGGGCAACCGGAAACGCTGGATCATTGCCACAGAGAACATGAAGGCCGGAGATACAGT CTTGAACTCTGACCACATAGGTCGAATGGCAGTTGCTGCTCGGGAAGGGGATGCCCATCC TCTGGGAGCCTTGCCAGTGGGGACCCTCATCAACAATGTGGAGAGTGAGCCAGGCCGGGG GGCCCAGTATATCCGAGCTGCAGGGACCTGCGGTGTGCTGCTACGGAAGGTGAATGGGAC GGCCATCATCCAGCTGCCCTCGAAAAGGCAGATGCAGGTGCTGGAAACGTGCATAGCAAC CGTGGGCCGAGTATCCAATGTTGATCATAACAAACGGGTCATCGGCAAGGCCGGGCGGAA CCGCTGGCTGGGAAAGAGGCCTAACAGTGGGCTCTGGCAGCGTAAGGGGGGCTGGGCTGG CCGGAAGATTCGGCCGCTGCCCCCCATGAAGAGTTACGTGAAGCTGCCCTCAGCTGCTGC CCAAAGCTAATATCCCTGGACTCTAATAAAATGGCCCCTATTTGTAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTCAGGATGGAGCGACGGCACTTGGACCAGTTAGCGTCATCCAGTAGCGCCAGGGTTCC TCGCTAAAGGTGATGGTGGTGTGCTGAACCCAACCGAGCCTGGCCAATCATGGCCCTGCG GGTATTGACCCGCGCTCTTAGCTCTCTGAGCCTGACGCCCCGGATCGCTGTCGCCCCCGG CCTAAGTCTGCTCCCGGCCGTCCAGGTGACGAACAATGTCCTCCTTACGCTGCCCTCTGG CTTGATGTCGCTTCCCTGCCGCCCAATCCTTACCTCTGTGGCCCTTAGTGCTACGTCTGT GTCCTGGAAGAGTCGTACCAAGTATACCGTTATGCCAGTGAAGATGAGGAAGTCTGGGGG CCGAAACCACACAGGCCAAATCCAAGTGCATGGTATTGGTGGGGGCCACAAGCAACGTTA TCGCATGATTGACTTTCTGAGGTTCCGGCCAGAGCATGAATCCAAGCCAGGACCCTTTGA GGAGAAGGTCATTGCTGTCCGCTATGATCCCTGTAGGTCAGCAGACATAGCTCTGGTTGC TGGGGGCAACCGGAAACGCTGGATCATTGCCACAGAGAACATGAAGGCCGGAGATACAGT CTTGAACTCTGACCACATAGGTCGAATGGCAGTTGCTGCTCGGGAAGGGGATGCCCATCC TCTGGGAGCCTTGCCAGTGGGGACCCTCATCAACAATGTGGAGAGTGAGCCAGGCCGGGG GGCCCAGTATATCCGAGCTGCAGGGACCTGCGGTGTGCTGCTACGGAAGGTGAATGGGAC GGCCATCATCCAGCTGCCCTCGAAAAGGCAGATGCAGGTGCTGGAAACGTGCATAGCAAC CGTGGGCCGAGTATCCAATGTTGATCATAACAAACGGGTCATCGGCAAGGCCGGGCGGAA CCGCTGGCTGGGAAAGAGGCCTAACAGTGGGCTCTGGCAGCGTAAGGGGGGCTGGGCTGG CCGGAAGATTCGGCCGCTGCCCCCCATGAAGAGTTACGTGAAGCTGCCCTCAGCTGCTGC CCAAAGCTAATATCCCTGGACTCTAATAAAATGGCCCCTATTTGTAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 854-1053, + strand, RNAz p=0.928528 | |
| 934-1063, + strand, RNAz p=0.941382 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 854-1053, + strand, RNAz p=0.928528 | |
| 934-1063, + strand, RNAz p=0.941382 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_015950, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 201-390, gnl|bosTau2|chr23 (13096584-13096396) | |
| 201-390, gnl|Hg17|chr6 (43133954-43133766) | |
| 201-390, gnl|Mm7|chr17 (44776117-44776304) | |
| 515-635, gnl|bosTau2|chr23 (13095411-13095291) | |
| 515-635, gnl|canFam2|chr12 (14579697-14579401) | |
| 515-635, gnl|canFam2|chr12 (14579578-14579708) | |
| 515-635, gnl|danRer3|chr19 (9744991-9745209) | |
| 515-635, gnl|danRer3|chr19 (9745094-9744949) | |
| 515-635, gnl|dasNov1|scaffold_4558 (20778-20480) | |
| 515-635, gnl|dasNov1|scaffold_4558 (20659-20789) | |
| 515-635, gnl|echTel1|scaffold_312242 (61298-60998) | |
| 515-635, gnl|echTel1|scaffold_312242 (61179-61310) | |
| 515-635, gnl|fr1|chrUn (262238764-262238458) | |
| 515-635, gnl|fr1|chrUn (262238650-262238785) | |
| 515-635, gnl|galGal2|chr3 (4204124-4203830) | |
| 515-635, gnl|galGal2|chr3 (4204005-4204135) | |
| 515-635, gnl|hg17|chr12 (88649567-88649789) | |
| 515-635, gnl|hg17|chr6 (43131793-43131923) | |
| 515-635, gnl|Hg17|chr6 (43131914-43131794) | |
| 515-635, gnl|loxAfr1|scaffold_19694 (51681-51978) | |
| 515-635, gnl|loxAfr1|scaffold_19694 (51800-51670) | |
| 515-635, gnl|mm7|chr17 (44777206-44777499) | |
| 515-635, gnl|mm7|chr17 (44777325-44777195) | |
| 515-635, gnl|Mm7|chr17 (44777202-44777322) | |
| 515-635, gnl|monDom2|scaffold_0 (198590887-198591207) | |
| 515-635, gnl|monDom2|scaffold_0 (198591006-198590876) | |
| 515-635, gnl|oryCun1|scaffold_51258 (367-86) | |
| 515-635, gnl|oryCun1|scaffold_51258 (248-378) | |
| 515-635, gnl|panTro1|chr10 (90777745-90777967) | |
| 515-635, gnl|panTro1|chr5 (43730381-43730496) | |
| 515-635, gnl|rheMac2|chr11 (90904502-90904723) | |
| 515-635, gnl|rheMac2|chr4 (42945025-42945155) | |
| 515-635, gnl|rn3|chr9 (10015920-10016142) | |
| 515-635, gnl|rn3|chr9 (10016034-10015909) | |
| 515-635, gnl|tetNig1|chr17 (1571699-1571993) | |
| 515-635, gnl|tetNig1|chr17 (1571813-1571690) | |
| 815-1063, gnl|bosTau2|chr23 (13094416-13094168) | |
| 815-1063, gnl|canFam2|chr12 (14578674-14578471) | |
| 815-1063, gnl|danRer3|chr19 (9749558-9749756) | |
| 815-1063, gnl|dasNov1|scaffold_4558 (19750-19540) | |
| 815-1063, gnl|echTel1|scaffold_312242 (60143-59940) | |
| 815-1063, gnl|fr1|chrUn (262238135-262237926) | |
| 815-1063, gnl|galGal2|chr3 (4203496-4203303) | |
| 815-1063, gnl|hg17|chr12 (88649864-88650073) | |
| 815-1063, gnl|Hg17|chr6 (43130205-43129918) | |
| 815-1063, gnl|mm7|chr17 (44778614-44778823) | |
| 815-1063, gnl|Mm7|chr17 (44778613-44778861) | |
| 815-1063, gnl|monDom2|scaffold_0 (198591951-198592159) | |
| 815-1063, gnl|oryCun1|scaffold_173098 (45231-45022) | |
| 815-1063, gnl|panTro1|chr10 (90778042-90778251) | |
| 815-1063, gnl|rheMac2|chr11 (90904798-90905007) | |
| 815-1063, gnl|rn3|chr9 (10017098-10017307) | |
| 815-1063, gnl|tetNig1|chr17 (1572251-1572460) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 201-390, gnl|bosTau2|chr23 (13096584-13096396) | |
| 201-390, gnl|Hg17|chr6 (43133954-43133766) | |
| 201-390, gnl|Mm7|chr17 (44776117-44776304) | |
| 515-635, gnl|bosTau2|chr23 (13095411-13095291) | |
| 515-635, gnl|canFam2|chr12 (14579697-14579401) | |
| 515-635, gnl|canFam2|chr12 (14579578-14579708) | |
| 515-635, gnl|danRer3|chr19 (9744991-9745209) | |
| 515-635, gnl|danRer3|chr19 (9745094-9744949) | |
| 515-635, gnl|dasNov1|scaffold_4558 (20778-20480) | |
| 515-635, gnl|dasNov1|scaffold_4558 (20659-20789) | |
| 515-635, gnl|echTel1|scaffold_312242 (61298-60998) | |
| 515-635, gnl|echTel1|scaffold_312242 (61179-61310) | |
| 515-635, gnl|fr1|chrUn (262238764-262238458) | |
| 515-635, gnl|fr1|chrUn (262238650-262238785) | |
| 515-635, gnl|galGal2|chr3 (4204124-4203830) | |
| 515-635, gnl|galGal2|chr3 (4204005-4204135) | |
| 515-635, gnl|hg17|chr12 (88649567-88649789) | |
| 515-635, gnl|hg17|chr6 (43131793-43131923) | |
| 515-635, gnl|Hg17|chr6 (43131914-43131794) | |
| 515-635, gnl|loxAfr1|scaffold_19694 (51681-51978) | |
| 515-635, gnl|loxAfr1|scaffold_19694 (51800-51670) | |
| 515-635, gnl|mm7|chr17 (44777206-44777499) | |
| 515-635, gnl|mm7|chr17 (44777325-44777195) | |
| 515-635, gnl|Mm7|chr17 (44777202-44777322) | |
| 515-635, gnl|monDom2|scaffold_0 (198590887-198591207) | |
| 515-635, gnl|monDom2|scaffold_0 (198591006-198590876) | |
| 515-635, gnl|oryCun1|scaffold_51258 (367-86) | |
| 515-635, gnl|oryCun1|scaffold_51258 (248-378) | |
| 515-635, gnl|panTro1|chr10 (90777745-90777967) | |
| 515-635, gnl|panTro1|chr5 (43730381-43730496) | |
| 515-635, gnl|rheMac2|chr11 (90904502-90904723) | |
| 515-635, gnl|rheMac2|chr4 (42945025-42945155) | |
| 515-635, gnl|rn3|chr9 (10015920-10016142) | |
| 515-635, gnl|rn3|chr9 (10016034-10015909) | |
| 515-635, gnl|tetNig1|chr17 (1571699-1571993) | |
| 515-635, gnl|tetNig1|chr17 (1571813-1571690) | |
| 815-1063, gnl|bosTau2|chr23 (13094416-13094168) | |
| 815-1063, gnl|canFam2|chr12 (14578674-14578471) | |
| 815-1063, gnl|danRer3|chr19 (9749558-9749756) | |
| 815-1063, gnl|dasNov1|scaffold_4558 (19750-19540) | |
| 815-1063, gnl|echTel1|scaffold_312242 (60143-59940) | |
| 815-1063, gnl|fr1|chrUn (262238135-262237926) | |
| 815-1063, gnl|galGal2|chr3 (4203496-4203303) | |
| 815-1063, gnl|hg17|chr12 (88649864-88650073) | |
| 815-1063, gnl|Hg17|chr6 (43130205-43129918) | |
| 815-1063, gnl|mm7|chr17 (44778614-44778823) | |
| 815-1063, gnl|Mm7|chr17 (44778613-44778861) | |
| 815-1063, gnl|monDom2|scaffold_0 (198591951-198592159) | |
| 815-1063, gnl|oryCun1|scaffold_173098 (45231-45022) | |
| 815-1063, gnl|panTro1|chr10 (90778042-90778251) | |
| 815-1063, gnl|rheMac2|chr11 (90904798-90905007) | |
| 815-1063, gnl|rn3|chr9 (10017098-10017307) | |
| 815-1063, gnl|tetNig1|chr17 (1572251-1572460) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cty (0.20816) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |