Ss1.1-Mixn-0020h07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCGGGAGCGCAGCGGTCCTCTGCAGGAGCCGCGGGTCGGGAGAACCGTTTCAGCTG CTGCTGGAGATTGTGTTTCCAGGGATTGCGGAAAACCCATCAGGAACCGAAAATGCCGAA ACCAATCAACGTCCGAGTTACCACCATGGATGCGGAGCTGGAGTTTGCCATCCAGCCAAA CACAACAGGAAAACAGCTCTTTGATCAGGTGGTAAAGACTATCGGCCTTCGGGAAGTGTG GTACTTTGGCCTCCAGTATGTGGATAACAAAGGATTTCCTACCTGGTTGAAACTTGATAA AAAGGTGTCCGCCCAGGAGGTCAGAAAGGAGAACCCTCTCCAGTTCAAGTTCCGGGCCAG GTTCTACCCCGAAGACGTGTCTGAGGAGCTCATCCAGGACATCACTCAGAAGCTTTTCTT CCTGCAAGTGAAGGACGGGATTCTCAGCGACGAGATCTACTGCCCGCCCGAGACCGCGGT GCTCCTGGGCTCCTACGCCGTGCAGGCCAAGTTCGGAGACTACAACAAAGAGCTGCACAA GTCCGGCTACCTCGGCTCTGAGCGGCTCATCCCCCAGAGAGTCATGGACCAGCACAAGCT CACCAGGGACCAGTGGGAGGACCGGATCCAGGTGTGGCACGCCGAGCACCGCGGGATGCT CAAAGACAGCGCCATGTTGGAGTATCTGAAGATTGCCCAGGACCTGGAAATGTATGGAAT CAACTACTTTGAGATAAAAAATAAGAAAGGAACAGACCTTTGGCTTGGAGTTGATGCTCT CGGACTGAATATTTATGAGAAAGACGATAAGTTGACCCCAAAGATTGGCTTTCCGTGGAG TGAAATCAGGAACATCTCTTTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCGGGAGCGCAGCGGTCCTCTGCAGGAGCCGCGGGTCGGGAGAACCGTTTCAGCTG CTGCTGGAGATTGTGTTTCCAGGGATTGCGGAAAACCCATCAGGAACCGAAAATGCCGAA ACCAATCAACGTCCGAGTTACCACCATGGATGCGGAGCTGGAGTTTGCCATCCAGCCAAA CACAACAGGAAAACAGCTCTTTGATCAGGTGGTAAAGACTATCGGCCTTCGGGAAGTGTG GTACTTTGGCCTCCAGTATGTGGATAACAAAGGATTTCCTACCTGGTTGAAACTTGATAA AAAGGTGTCCGCCCAGGAGGTCAGAAAGGAGAACCCTCTCCAGTTCAAGTTCCGGGCCAG GTTCTACCCCGAAGACGTGTCTGAGGAGCTCATCCAGGACATCACTCAGAAGCTTTTCTT CCTGCAAGTGAAGGACGGGATTCTCAGCGACGAGATCTACTGCCCGCCCGAGACCGCGGT GCTCCTGGGCTCCTACGCCGTGCAGGCCAAGTTCGGAGACTACAACAAAGAGCTGCACAA GTCCGGCTACCTCGGCTCTGAGCGGCTCATCCCCCAGAGAGTCATGGACCAGCACAAGCT CACCAGGGACCAGTGGGAGGACCGGATCCAGGTGTGGCACGCCGAGCACCGCGGGATGCT CAAAGACAGCGCCATGTTGGAGTATCTGAAGATTGCCCAGGACCTGGAAATGTATGGAAT CAACTACTTTGAGATAAAAAATAAGAAAGGAACAGACCTTTGGCTTGGAGTTGATGCTCT CGGACTGAATATTTATGAGAAAGACGATAAGTTGACCCCAAAGATTGGCTTTCCGTGGAG TGAAATCAGGAACATCTCTTTCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 287-577, gnl|bosTau2|chr15 (8769350-8769060) | |
| 287-577, gnl|Hg17|chr11 (109640187-109639897) | |
| 287-577, gnl|Mm7|chr9 (52044010-52044290) | |
| 674-812, gnl|bosTau2|chr15 (8760497-8760359) | |
| 674-812, gnl|canFam2|chr5 (25599936-25599838) | |
| 674-812, gnl|danRer3|chr20 (16607543-16607446) | |
| 674-812, gnl|dasNov1|scaffold_2940 (7431-7333) | |
| 674-812, gnl|echTel1|scaffold_225947 (6138-6040) | |
| 674-812, gnl|fr1|chrUn (172178587-172178490) | |
| 674-812, gnl|galGal2|chr1 (171590000-171589902) | |
| 674-812, gnl|hg17|chr11 (4189203-4189297) | |
| 674-812, gnl|Hg17|chr11 (109633838-109633700) | |
| 674-812, gnl|loxAfr1|scaffold_24170 (20291-20389) | |
| 674-812, gnl|mm7|chr8 (5046894-5046796) | |
| 674-812, gnl|Mm7|chr9 (52046513-52046651) | |
| 674-812, gnl|monDom2|scaffold_2 (132099514-132099416) | |
| 674-812, gnl|oryCun1|scaffold_48777 (2084-2182) | |
| 674-812, gnl|panTro1|chr9 (4321058-4321152) | |
| 674-812, gnl|rheMac2|chr14 (108753739-108753837) | |
| 674-812, gnl|rn3|chr8 (55446878-55446780) | |
| 674-812, gnl|tetNig1|chr3 (6336937-6337034) | |
| 674-812, gnl|xenTro1|scaffold_396 (564553-564459) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 287-577, gnl|bosTau2|chr15 (8769350-8769060) | |
| 287-577, gnl|Hg17|chr11 (109640187-109639897) | |
| 287-577, gnl|Mm7|chr9 (52044010-52044290) | |
| 674-812, gnl|bosTau2|chr15 (8760497-8760359) | |
| 674-812, gnl|canFam2|chr5 (25599936-25599838) | |
| 674-812, gnl|danRer3|chr20 (16607543-16607446) | |
| 674-812, gnl|dasNov1|scaffold_2940 (7431-7333) | |
| 674-812, gnl|echTel1|scaffold_225947 (6138-6040) | |
| 674-812, gnl|fr1|chrUn (172178587-172178490) | |
| 674-812, gnl|galGal2|chr1 (171590000-171589902) | |
| 674-812, gnl|hg17|chr11 (4189203-4189297) | |
| 674-812, gnl|Hg17|chr11 (109633838-109633700) | |
| 674-812, gnl|loxAfr1|scaffold_24170 (20291-20389) | |
| 674-812, gnl|mm7|chr8 (5046894-5046796) | |
| 674-812, gnl|Mm7|chr9 (52046513-52046651) | |
| 674-812, gnl|monDom2|scaffold_2 (132099514-132099416) | |
| 674-812, gnl|oryCun1|scaffold_48777 (2084-2182) | |
| 674-812, gnl|panTro1|chr9 (4321058-4321152) | |
| 674-812, gnl|rheMac2|chr14 (108753739-108753837) | |
| 674-812, gnl|rn3|chr8 (55446878-55446780) | |
| 674-812, gnl|tetNig1|chr3 (6336937-6337034) | |
| 674-812, gnl|xenTro1|scaffold_396 (564553-564459) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cag (0.302389) | |
| cst (0.280073) | |
| cly (0.241284) | |
| eje (0.197668) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cli (0.152812) | |
| ute (0.132784) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| cst (0.280073) | |
| cly (0.241284) | |
| eje (0.197668) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cli (0.152812) | |
| ute (0.132784) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) |