Ss1.1-Mixn-0020h24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCATTTAGTGTTCCCCCTCTCCCTCCTCTCCCCAACTTGGGTCTATTTTTAGGCATCTC CTAGTTTGGGGAGGATTTTCTGGCCGAAGATGGCAGGAACCCAGAGCCAAGGCGAGAAGG CTGGGGGGGGCGGGCAGGACAGCCAGCTTCCCTCCCTCCCCGGATCTCCCATCTATGCCC ATGGAACAGTTCTCATGCGGCCACACAAGCAGGACCCTGGGGGTTGGGGGGCTCTGACCT CTGACCTCTCCCATGACTTTGTCTCTCTGCCCCCTGCTCCCCGCCTCCATCTCCTGGTGC TTGCCCCACCCTGCATGGATCTGCTTTGCCCCAGCGCGTATTCGGGACGTATTTCCGCGT TGGCTTCTACGGCGCCCGCTTCGGTGACCTGGATGAGCAGGAGTTTGTGTACAAGGAGCC ATCCATCACAAAGCTGGCAGAAATCTCACACCGGCTGGAGGAGTTCTACACAGAGCGGTT CGGGGAAGACGTGGTTGAGATCATCAAAGATTCTAACCCTGTGGACAAAACCAAACTGGA CCCACAGAAGGCGTACATCCAGATCACATACGTGGAGCCGCACTTCGACACCTATGAGCT CAAGGACCGGGTGACCTACTTCGACCGCAACTACGGTCTGCGAACCTTTCTGTTCTGCAC ACCCTTCACGCCAGACGGGCGAGCGCACGGGGAGCTGCCGGAACAGCACAAGCGCAAGAC ACTGCTCAGTACAGACCACGCCTTCCCCTACATCAAGACGCGCATCCGCGTGTGCCACCG CGAGGAGACAGTGCTGACACCAGTGGAAGTGGCCATTGAGGACATGCAGAAGAAGACTCG GGAGCTGGCCTTCGCCACTGAGCAGGACCCGCCAGATGCCAAGATGCTGCAGATGGTGCT GCAGGGCTCCGTGGGGCCCACTGTGAACCAGGGTCCCCTGGAGGTGGCTCAGGTGTTTTT GGCTGAGATCCCCGAAGACCCCAAGCTCTTCAGGCATCACAACAAGCTGCGGCTCTGTTT CAAGGACTTTTGCAAGAAGTGCGAGGATGCACTGCGGAAGAACAAAGCCCTGATTGGGCC AGACCAGAAGGAGTACCACCGTGAGCTAGAGCGCAACTACTCCCGCCTTCGGGAGGCTCT GCAGCCCCTGCTCACCCAGCGCCTTCCCCAGCTGCTGGCACCGACCACAGCCAGTAGCCT CAGGAACTCCTTGAACAGAGCCAGTTTCCGGAAGGCTGATGTCTGAACCCACAGGGCCTG AAGCCACACGCCAGAGGAACCAGCAGCCTGGCCTCAGTTGTCTGTGCCTTCCTGAGAGTC TCCCCCCACTGCCCACTTAGCCCTGGGTGACCACACTGCACATGGGGCTGGGCCCTCTGT TCCTCTGTCCTCATCTGTGTGCACTGATGCTCCTTACCTTTTCTAATTTAAAATGGTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCATTTAGTGTTCCCCCTCTCCCTCCTCTCCCCAACTTGGGTCTATTTTTAGGCATCTC CTAGTTTGGGGAGGATTTTCTGGCCGAAGATGGCAGGAACCCAGAGCCAAGGCGAGAAGG CTGGGGGGGGCGGGCAGGACAGCCAGCTTCCCTCCCTCCCCGGATCTCCCATCTATGCCC ATGGAACAGTTCTCATGCGGCCACACAAGCAGGACCCTGGGGGTTGGGGGGCTCTGACCT CTGACCTCTCCCATGACTTTGTCTCTCTGCCCCCTGCTCCCCGCCTCCATCTCCTGGTGC TTGCCCCACCCTGCATGGATCTGCTTTGCCCCAGCGCGTATTCGGGACGTATTTCCGCGT TGGCTTCTACGGCGCCCGCTTCGGTGACCTGGATGAGCAGGAGTTTGTGTACAAGGAGCC ATCCATCACAAAGCTGGCAGAAATCTCACACCGGCTGGAGGAGTTCTACACAGAGCGGTT CGGGGAAGACGTGGTTGAGATCATCAAAGATTCTAACCCTGTGGACAAAACCAAACTGGA CCCACAGAAGGCGTACATCCAGATCACATACGTGGAGCCGCACTTCGACACCTATGAGCT CAAGGACCGGGTGACCTACTTCGACCGCAACTACGGTCTGCGAACCTTTCTGTTCTGCAC ACCCTTCACGCCAGACGGGCGAGCGCACGGGGAGCTGCCGGAACAGCACAAGCGCAAGAC ACTGCTCAGTACAGACCACGCCTTCCCCTACATCAAGACGCGCATCCGCGTGTGCCACCG CGAGGAGACAGTGCTGACACCAGTGGAAGTGGCCATTGAGGACATGCAGAAGAAGACTCG GGAGCTGGCCTTCGCCACTGAGCAGGACCCGCCAGATGCCAAGATGCTGCAGATGGTGCT GCAGGGCTCCGTGGGGCCCACTGTGAACCAGGGTCCCCTGGAGGTGGCTCAGGTGTTTTT GGCTGAGATCCCCGAAGACCCCAAGCTCTTCAGGCATCACAACAAGCTGCGGCTCTGTTT CAAGGACTTTTGCAAGAAGTGCGAGGATGCACTGCGGAAGAACAAAGCCCTGATTGGGCC AGACCAGAAGGAGTACCACCGTGAGCTAGAGCGCAACTACTCCCGCCTTCGGGAGGCTCT GCAGCCCCTGCTCACCCAGCGCCTTCCCCAGCTGCTGGCACCGACCACAGCCAGTAGCCT CAGGAACTCCTTGAACAGAGCCAGTTTCCGGAAGGCTGATGTCTGAACCCACAGGGCCTG AAGCCACACGCCAGAGGAACCAGCAGCCTGGCCTCAGTTGTCTGTGCCTTCCTGAGAGTC TCCCCCCACTGCCCACTTAGCCCTGGGTGACCACACTGCACATGGGGCTGGGCCCTCTGT TCCTCTGTCCTCATCTGTGTGCACTGATGCTCCTTACCTTTTCTAATTTAAAATGGTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-177, - strand, RNAz p=0.99642 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-177, - strand, RNAz p=0.99642 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-328, gnl|bosTau2|chr7 (11091622-11091301) | |
| 1-328, gnl|Hg17|chr19 (11175313-11174958) | |
| 1-328, gnl|Mm7|chr9 (21685950-21685615) | |
| 549-787, gnl|bosTau2|chr7 (11089671-11089433) | |
| 549-787, gnl|canFam2|chr1 (92430243-92430434) | |
| 549-787, gnl|canFam2|chr20 (53068957-53068711) | |
| 549-787, gnl|danRer3|chr6 (16752873-16753054) | |
| 549-787, gnl|danRer3|chrNA (177551662-177551413) | |
| 549-787, gnl|dasNov1|scaffold_140816 (4878-4687) | |
| 549-787, gnl|dasNov1|scaffold_62432 (76-322) | |
| 549-787, gnl|echTel1|scaffold_182398 (3337-3090) | |
| 549-787, gnl|echTel1|scaffold_182398 (3080-3271) | |
| 549-787, gnl|fr1|chrUn (67658927-67659190) | |
| 549-787, gnl|fr1|chrUn (22173080-22172894) | |
| 549-787, gnl|galGal2|chr8 (27728354-27728599) | |
| 549-787, gnl|galGal2|chrZ_random (109380-109571) | |
| 549-787, gnl|hg17|chr19 (11173545-11173806) | |
| 549-787, gnl|Hg17|chr19 (11173803-11173565) | |
| 549-787, gnl|hg17|chr9 (436357-436548) | |
| 549-787, gnl|loxAfr1|scaffold_1103 (9838-9647) | |
| 549-787, gnl|loxAfr1|scaffold_25408 (64222-64481) | |
| 549-787, gnl|mm7|chr19 (24888311-24888504) | |
| 549-787, gnl|mm7|chr9 (21683916-21684171) | |
| 549-787, gnl|Mm7|chr9 (21684168-21683930) | |
| 549-787, gnl|monDom2|scaffold_106 (3175269-3175509) | |
| 549-787, gnl|monDom2|scaffold_17 (22338737-22338928) | |
| 549-787, gnl|oryCun1|scaffold_174877 (19281-19088) | |
| 549-787, gnl|oryCun1|scaffold_211801 (17116-16870) | |
| 549-787, gnl|panTro1|chr11 (425676-425867) | |
| 549-787, gnl|panTro1|chr20 (11570611-11570872) | |
| 549-787, gnl|rheMac2|chr15 (76760710-76760518) | |
| 549-787, gnl|rheMac2|chr19 (11025926-11026187) | |
| 549-787, gnl|rn3|chr1 (228786766-228786955) | |
| 549-787, gnl|rn3|chr8 (20898688-20898944) | |
| 549-787, gnl|tetNig1|chr1 (16033712-16033896) | |
| 549-787, gnl|tetNig1|chr3 (11734896-11734654) | |
| 549-787, gnl|xenTro1|scaffold_468 (1007958-1007694) | |
| 549-787, gnl|xenTro1|scaffold_535 (5155-4966) | |
| 929-1040, gnl|bosTau2|chr7 (11088832-11088721) | |
| 929-1040, gnl|Hg17|chr19 (11172501-11172390) | |
| 929-1040, gnl|Mm7|chr9 (21683208-21683097) | |
| 1198-1440, gnl|bosTau2|chr7 (11087434-11087195) | |
| 1198-1440, gnl|canFam2|chr20 (53070725-53070525) | |
| 1198-1440, gnl|dasNov1|scaffold_233880 (735-560) | |
| 1198-1440, gnl|hg17|chr19 (11170938-11171146) | |
| 1198-1440, gnl|Hg17|chr19 (11171221-11170980) | |
| 1198-1440, gnl|loxAfr1|scaffold_25408 (62530-62730) | |
| 1198-1440, gnl|mm7|chr9 (21681740-21681912) | |
| 1198-1440, gnl|Mm7|chr9 (21681982-21681766) | |
| 1198-1440, gnl|monDom2|scaffold_106 (3173118-3173355) | |
| 1198-1440, gnl|panTro1|chr20 (11568003-11568211) | |
| 1198-1440, gnl|rheMac2|chr19 (11023332-11023540) | |
| 1198-1440, gnl|rn3|chr8 (20896506-20896695) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-328, gnl|bosTau2|chr7 (11091622-11091301) | |
| 1-328, gnl|Hg17|chr19 (11175313-11174958) | |
| 1-328, gnl|Mm7|chr9 (21685950-21685615) | |
| 549-787, gnl|bosTau2|chr7 (11089671-11089433) | |
| 549-787, gnl|canFam2|chr1 (92430243-92430434) | |
| 549-787, gnl|canFam2|chr20 (53068957-53068711) | |
| 549-787, gnl|danRer3|chr6 (16752873-16753054) | |
| 549-787, gnl|danRer3|chrNA (177551662-177551413) | |
| 549-787, gnl|dasNov1|scaffold_140816 (4878-4687) | |
| 549-787, gnl|dasNov1|scaffold_62432 (76-322) | |
| 549-787, gnl|echTel1|scaffold_182398 (3337-3090) | |
| 549-787, gnl|echTel1|scaffold_182398 (3080-3271) | |
| 549-787, gnl|fr1|chrUn (67658927-67659190) | |
| 549-787, gnl|fr1|chrUn (22173080-22172894) | |
| 549-787, gnl|galGal2|chr8 (27728354-27728599) | |
| 549-787, gnl|galGal2|chrZ_random (109380-109571) | |
| 549-787, gnl|hg17|chr19 (11173545-11173806) | |
| 549-787, gnl|Hg17|chr19 (11173803-11173565) | |
| 549-787, gnl|hg17|chr9 (436357-436548) | |
| 549-787, gnl|loxAfr1|scaffold_1103 (9838-9647) | |
| 549-787, gnl|loxAfr1|scaffold_25408 (64222-64481) | |
| 549-787, gnl|mm7|chr19 (24888311-24888504) | |
| 549-787, gnl|mm7|chr9 (21683916-21684171) | |
| 549-787, gnl|Mm7|chr9 (21684168-21683930) | |
| 549-787, gnl|monDom2|scaffold_106 (3175269-3175509) | |
| 549-787, gnl|monDom2|scaffold_17 (22338737-22338928) | |
| 549-787, gnl|oryCun1|scaffold_174877 (19281-19088) | |
| 549-787, gnl|oryCun1|scaffold_211801 (17116-16870) | |
| 549-787, gnl|panTro1|chr11 (425676-425867) | |
| 549-787, gnl|panTro1|chr20 (11570611-11570872) | |
| 549-787, gnl|rheMac2|chr15 (76760710-76760518) | |
| 549-787, gnl|rheMac2|chr19 (11025926-11026187) | |
| 549-787, gnl|rn3|chr1 (228786766-228786955) | |
| 549-787, gnl|rn3|chr8 (20898688-20898944) | |
| 549-787, gnl|tetNig1|chr1 (16033712-16033896) | |
| 549-787, gnl|tetNig1|chr3 (11734896-11734654) | |
| 549-787, gnl|xenTro1|scaffold_468 (1007958-1007694) | |
| 549-787, gnl|xenTro1|scaffold_535 (5155-4966) | |
| 929-1040, gnl|bosTau2|chr7 (11088832-11088721) | |
| 929-1040, gnl|Hg17|chr19 (11172501-11172390) | |
| 929-1040, gnl|Mm7|chr9 (21683208-21683097) | |
| 1198-1440, gnl|bosTau2|chr7 (11087434-11087195) | |
| 1198-1440, gnl|canFam2|chr20 (53070725-53070525) | |
| 1198-1440, gnl|dasNov1|scaffold_233880 (735-560) | |
| 1198-1440, gnl|hg17|chr19 (11170938-11171146) | |
| 1198-1440, gnl|Hg17|chr19 (11171221-11170980) | |
| 1198-1440, gnl|loxAfr1|scaffold_25408 (62530-62730) | |
| 1198-1440, gnl|mm7|chr9 (21681740-21681912) | |
| 1198-1440, gnl|Mm7|chr9 (21681982-21681766) | |
| 1198-1440, gnl|monDom2|scaffold_106 (3173118-3173355) | |
| 1198-1440, gnl|panTro1|chr20 (11568003-11568211) | |
| 1198-1440, gnl|rheMac2|chr19 (11023332-11023540) | |
| 1198-1440, gnl|rn3|chr8 (20896506-20896695) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| pla (0.401016) | |
| elu (0.385356) | |
| cga (0.279096) | |
| fce (0.271592) | |
| nep (0.183925) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| elu (0.385356) | |
| cga (0.279096) | |
| fce (0.271592) | |
| nep (0.183925) |