Non-Coding RNA Search

Ss1.1-Mixn-0020i05.5

Sequence:


               
               ATTAAAAAATAATAACAGACACAATATCAAAAACACAAATGCCACTGGTAGAGGGTACAG
CTGAGAACGTCTGGGTCCCACCTGAGGGGCAGCACCAGGGACTCCATGGTCCACCAACCT
CCCCCACCCTGGAGCAGCTAGGGGTTTGGACCGCTGGGTCCTGCTTGGGCCTCCAGCCCC
CGCCCTCACACTTGGGGAGGAGGTGGGAGAGAGGGCCATCTCCCCAATAAATAAGTGCAG
CCCCAACCCTCGGGGCCAGGGATTCCGGCTCAGCTGGGACTTGGAGAGACCACTTCAGCT
TGTCCGCAACCGTGTCCAGGGGAAGGCTGGGCTCCTCACTAGGGAGGGGAGGGAGGCTTC
TCTAGGCTGAGCTGGGCTGAAGAATTCCATCCTTTTGTCTCCTAGGAGGCCAGAGGCAGC
CCCTGGATGCTGGGCCGGCGACGGGGGTCCTGCCCCCTACAGCAGGAGAAGCTGGGGCAC
TTTTCTAGCAGTTGGTCCAGCCACGTCTGAGTGCGGAGAGTTGCGACACGGGAGAGAAGC
TTCTCACACACGCCCGGGGGTGGCTCCCGAATGCAGTCTAGTTGGTGCCATCTTCTGTGG
CAGGTAAGGCTGGACTGGACGAGCTCCCACCCTGTTCCTCCTCTTCCATAGCCAGGTCCT
GAGAGCTTGAGGCTCCGGCTCCAGCTTGGGCGCGGGCCTCATTGCCACCCTCACCCTCAC
CCCCCTCGCCGCCACCCTCCTCCATGGGCTCCAGCCCCAGTCCATCCATTTCCGAGAAGA
GCGGGTCATCAGGGTGGCCGGGGTCTTGGGTGCTACTGCCGCAGTCCACACAGGCCATCA
CGTCAAGAGCCCGAGGCAGCTGACCCTTCCGGACCCAGGAGTGCACGGCCCCCAGCTCCC
TCCGCTGGTCCTCCGAGAACCGAGGCTGCTGCTTCTGCATGGCCCGGAGCCGCTCCCGGT
CCTGCTTCAGCACAGAGGCCATGTCCCTGGAGGGCACCTGGTAGGTCATCATGACGCGCT
GGTCAGCGTTGGCCATGAGCAGCCAGATGGGGTCCTGGAGCACGTACTTGATGACCTGGT
CCCCGGGCTCAGCCCTGGCCTGGGCAGCCCCCGCCTCCGCCTCGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAAAAATAATAACAGACACAATATCAAAAACACAAATGCCACTGGTAGAGGGTACAG
CTGAGAACGTCTGGGTCCCACCTGAGGGGCAGCACCAGGGACTCCATGGTCCACCAACCT
CCCCCACCCTGGAGCAGCTAGGGGTTTGGACCGCTGGGTCCTGCTTGGGCCTCCAGCCCC
CGCCCTCACACTTGGGGAGGAGGTGGGAGAGAGGGCCATCTCCCCAATAAATAAGTGCAG
CCCCAACCCTCGGGGCCAGGGATTCCGGCTCAGCTGGGACTTGGAGAGACCACTTCAGCT
TGTCCGCAACCGTGTCCAGGGGAAGGCTGGGCTCCTCACTAGGGAGGGGAGGGAGGCTTC
TCTAGGCTGAGCTGGGCTGAAGAATTCCATCCTTTTGTCTCCTAGGAGGCCAGAGGCAGC
CCCTGGATGCTGGGCCGGCGACGGGGGTCCTGCCCCCTACAGCAGGAGAAGCTGGGGCAC
TTTTCTAGCAGTTGGTCCAGCCACGTCTGAGTGCGGAGAGTTGCGACACGGGAGAGAAGC
TTCTCACACACGCCCGGGGGTGGCTCCCGAATGCAGTCTAGTTGGTGCCATCTTCTGTGG
CAGGTAAGGCTGGACTGGACGAGCTCCCACCCTGTTCCTCCTCTTCCATAGCCAGGTCCT
GAGAGCTTGAGGCTCCGGCTCCAGCTTGGGCGCGGGCCTCATTGCCACCCTCACCCTCAC
CCCCCTCGCCGCCACCCTCCTCCATGGGCTCCAGCCCCAGTCCATCCATTTCCGAGAAGA
GCGGGTCATCAGGGTGGCCGGGGTCTTGGGTGCTACTGCCGCAGTCCACACAGGCCATCA
CGTCAAGAGCCCGAGGCAGCTGACCCTTCCGGACCCAGGAGTGCACGGCCCCCAGCTCCC
TCCGCTGGTCCTCCGAGAACCGAGGCTGCTGCTTCTGCATGGCCCGGAGCCGCTCCCGGT
CCTGCTTCAGCACAGAGGCCATGTCCCTGGAGGGCACCTGGTAGGTCATCATGACGCGCT
GGTCAGCGTTGGCCATGAGCAGCCAGATGGGGTCCTGGAGCACGTACTTGATGACCTGGT
CCCCGGGCTCAGCCCTGGCCTGGGCAGCCCCCGCCTCCGCCTCGGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7TPI0_PHOSU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7TPI0_PHOSU

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               81-275, - strand, RNAz p=0.992826
               

               
               313-431, - strand, RNAz p=0.904108
               

               
               625-803, - strand, RNAz p=0.999791

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-275, - strand, RNAz p=0.992826
               

               
               313-431, - strand, RNAz p=0.904108
               

               
               625-803, - strand, RNAz p=0.999791

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_002616, -
               

               
               5' of NM_002616, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002616, -
               

               
               5' of NM_002616, -

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               8-836, gnl|bosTau2|chr2 (77470037-77470887)
               

               
               8-836, gnl|Hg17|chr17 (7984537-7985384)
               

               
               8-836, gnl|Mm7|chr11 (69191503-69190654)
               


               
               986-1128, gnl|bosTau2|chr2 (77471773-77471915)
               

               
               986-1128, gnl|canFam2|chr5 (35953452-35953550)
               

               
               986-1128, gnl|danRer3|chrNA (156811847-156811945)
               

               
               986-1128, gnl|dasNov1|scaffold_178922 (3429-3527)
               

               
               986-1128, gnl|echTel1|scaffold_242791 (351-449)
               

               
               986-1128, gnl|fr1|chrUn (11400583-11400485)
               

               
               986-1128, gnl|hg17|chr17 (7986309-7986407)
               

               
               986-1128, gnl|Hg17|chr17 (7986311-7986453)
               

               
               986-1128, gnl|loxAfr1|scaffold_24559 (32102-32004)
               

               
               986-1128, gnl|mm7|chr11 (69189629-69189531)
               

               
               986-1128, gnl|Mm7|chr11 (69189625-69189483)
               

               
               986-1128, gnl|monDom2|scaffold_66 (5348653-5348751)
               

               
               986-1128, gnl|panTro1|chr19_random (30467498-30467400)
               

               
               986-1128, gnl|rheMac2|chr16 (7902250-7902348)
               

               
               986-1128, gnl|rn3|chr10 (55881033-55880935)
               

               
               986-1128, gnl|tetNig1|chrUn_random (26623437-26623535)
               

               
               986-1128, gnl|xenTro1|scaffold_814 (314224-314322)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-836, gnl|bosTau2|chr2 (77470037-77470887)
               

               
               8-836, gnl|Hg17|chr17 (7984537-7985384)
               

               
               8-836, gnl|Mm7|chr11 (69191503-69190654)
               


               
               986-1128, gnl|bosTau2|chr2 (77471773-77471915)
               

               
               986-1128, gnl|canFam2|chr5 (35953452-35953550)
               

               
               986-1128, gnl|danRer3|chrNA (156811847-156811945)
               

               
               986-1128, gnl|dasNov1|scaffold_178922 (3429-3527)
               

               
               986-1128, gnl|echTel1|scaffold_242791 (351-449)
               

               
               986-1128, gnl|fr1|chrUn (11400583-11400485)
               

               
               986-1128, gnl|hg17|chr17 (7986309-7986407)
               

               
               986-1128, gnl|Hg17|chr17 (7986311-7986453)
               

               
               986-1128, gnl|loxAfr1|scaffold_24559 (32102-32004)
               

               
               986-1128, gnl|mm7|chr11 (69189629-69189531)
               

               
               986-1128, gnl|Mm7|chr11 (69189625-69189483)
               

               
               986-1128, gnl|monDom2|scaffold_66 (5348653-5348751)
               

               
               986-1128, gnl|panTro1|chr19_random (30467498-30467400)
               

               
               986-1128, gnl|rheMac2|chr16 (7902250-7902348)
               

               
               986-1128, gnl|rn3|chr10 (55881033-55880935)
               

               
               986-1128, gnl|tetNig1|chrUn_random (26623437-26623535)
               

               
               986-1128, gnl|xenTro1|scaffold_814 (314224-314322)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               nep (0.551775)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.551775)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)

	81-275, - strand, RNAz p=0.992826
	313-431, - strand, RNAz p=0.904108
	625-803, - strand, RNAz p=0.999791

	8-836, gnl\|bosTau2\|chr2 (77470037-77470887)
	8-836, gnl\|Hg17\|chr17 (7984537-7985384)
	8-836, gnl\|Mm7\|chr11 (69191503-69190654)

	986-1128, gnl\|bosTau2\|chr2 (77471773-77471915)
	986-1128, gnl\|canFam2\|chr5 (35953452-35953550)
	986-1128, gnl\|danRer3\|chrNA (156811847-156811945)
	986-1128, gnl\|dasNov1\|scaffold_178922 (3429-3527)
	986-1128, gnl\|echTel1\|scaffold_242791 (351-449)
	986-1128, gnl\|fr1\|chrUn (11400583-11400485)
	986-1128, gnl\|hg17\|chr17 (7986309-7986407)
	986-1128, gnl\|Hg17\|chr17 (7986311-7986453)
	986-1128, gnl\|loxAfr1\|scaffold_24559 (32102-32004)
	986-1128, gnl\|mm7\|chr11 (69189629-69189531)
	986-1128, gnl\|Mm7\|chr11 (69189625-69189483)
	986-1128, gnl\|monDom2\|scaffold_66 (5348653-5348751)
	986-1128, gnl\|panTro1\|chr19_random (30467498-30467400)
	986-1128, gnl\|rheMac2\|chr16 (7902250-7902348)
	986-1128, gnl\|rn3\|chr10 (55881033-55880935)
	986-1128, gnl\|tetNig1\|chrUn_random (26623437-26623535)
	986-1128, gnl\|xenTro1\|scaffold_814 (314224-314322)

	nep (0.551775)
	mcp (0.170648)
	fhi (0.169578)
	cli (0.152812)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	ute (0.132784)
	eep (0.122564)
	jej (0.0989218)