Ss1.1-Mixn-0020i18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGTCCTGGAGAGATGACAGGCAGTGGGGACCGGCGCTTCGTGGGCACTCTCCACCTGC TGCTGCTGGTGGCCACCCTGTCCCTGGCGGCTCAGGGGGTCAGTCGGAGCGCGGCAGCAT GGACCCAGGAGAAGAGTTATCATCAACCAGCCCTTTTGAATTTATCATCTCTTCGGCAAG TTGCAGAAGGCACCAGTATTTCTGAAATGTGGCAAAATGACTTACGACCACTGCTGATAG AGCGATATCCTGGATCCCCTGGAAGCTATGCTGCTCGCCAGCATATAATGCAGAGAATTC AGAGACTTCAAGCTGACTGGGTCTTGGAAGTAGACACCTTCTTGAGTCGAACACCCTATG GGTACCGGTCTTTCTCAAATATCATCAGCACTCTCAATCCCACTGCTAAACGACACTTGG TCCTCGCCTGCCACTACGATTCCAAGTATTTTCCCCACTGGGACAACAGAGTGTTTGTGG GAGCCACTGATTCAGCTGTGCCATGTGCGATGATACTGGAACTTGCCCGGGCTTTAGACA AACAACTCCTTTCCTTGAAGAATATATCAGACTTGAAGCCAGATCTCTCACTCCAGCTAA TTTTCTTTGATGGGGAAGAGGCTTTTCTTCACTGGTCTCCTCATGATTCTCTGTATGGGT CTCGGCACTTAGCTTCCAAGATGGCATCGACCCCGCACCCACCTGGAGCAAGGGACACCA ACCAACTGCATGGCATGGATTTATTGATCTTACTGGATTTAATTGGAGCTCCAAACCCAA CATTTCCCAATTTTTTCCCAAACTCTGCCAGATGGTTTGATAGACTTCAAGCAATTGAAC ATGAACTCCATGTATTTGGTTTGCTCAAGGATCACTCTTGGGAGAGACGGTATTTCCAGA ATTATGGTTATGGAGGTGTGATTCAGGATGACCATGTTCCATTTTTAAGAAAAGGTGTTC CAGTTTTGCATCTGATACCATCTCCTTTCCCTGAAGTATGGCACACCATGGATGACAATG AAGAAAATTTGGATAAAACAACCATTGACAATCTAAACAAAATCCTGCAAGTCTTTGTGT TAGAATATCTTCATTTGTAATATTCTGATTTAGTTTATGGTTTGCATCTAGTATCACATT CAGAATTCAAGGAACCATTTTAAATAATCTGACTCCAAACAAATCTTATGTGGAAACTGC TACAGATTCATTCCATAGGTACCTTTGAGTATCCTAGATTTACATCATCTCCTAAATTGC TCATTAATTTTCATCTAGCTAAAGAGTGTAAGAAAAACTGAAGATAAATATCTTTTAAAG ACTCCTTTAGATACAATATGAAGCTAACTCAGATTCATATAGTCAGTATCATGGTTTCTA AATAGTACTTATATATGATGGTCATGTGAGATGCATAGACTTAGTTTTATGATTTTTTTT TTCACTTGGAATTTATACAAAACAGAGATGTAGTTTGAAGACTTACATTTCTTTGAGAAA TCTTTGTATGGTTTATTTCATGGAAATTAAATCAGAATTAAATGCCAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGTCCTGGAGAGATGACAGGCAGTGGGGACCGGCGCTTCGTGGGCACTCTCCACCTGC TGCTGCTGGTGGCCACCCTGTCCCTGGCGGCTCAGGGGGTCAGTCGGAGCGCGGCAGCAT GGACCCAGGAGAAGAGTTATCATCAACCAGCCCTTTTGAATTTATCATCTCTTCGGCAAG TTGCAGAAGGCACCAGTATTTCTGAAATGTGGCAAAATGACTTACGACCACTGCTGATAG AGCGATATCCTGGATCCCCTGGAAGCTATGCTGCTCGCCAGCATATAATGCAGAGAATTC AGAGACTTCAAGCTGACTGGGTCTTGGAAGTAGACACCTTCTTGAGTCGAACACCCTATG GGTACCGGTCTTTCTCAAATATCATCAGCACTCTCAATCCCACTGCTAAACGACACTTGG TCCTCGCCTGCCACTACGATTCCAAGTATTTTCCCCACTGGGACAACAGAGTGTTTGTGG GAGCCACTGATTCAGCTGTGCCATGTGCGATGATACTGGAACTTGCCCGGGCTTTAGACA AACAACTCCTTTCCTTGAAGAATATATCAGACTTGAAGCCAGATCTCTCACTCCAGCTAA TTTTCTTTGATGGGGAAGAGGCTTTTCTTCACTGGTCTCCTCATGATTCTCTGTATGGGT CTCGGCACTTAGCTTCCAAGATGGCATCGACCCCGCACCCACCTGGAGCAAGGGACACCA ACCAACTGCATGGCATGGATTTATTGATCTTACTGGATTTAATTGGAGCTCCAAACCCAA CATTTCCCAATTTTTTCCCAAACTCTGCCAGATGGTTTGATAGACTTCAAGCAATTGAAC ATGAACTCCATGTATTTGGTTTGCTCAAGGATCACTCTTGGGAGAGACGGTATTTCCAGA ATTATGGTTATGGAGGTGTGATTCAGGATGACCATGTTCCATTTTTAAGAAAAGGTGTTC CAGTTTTGCATCTGATACCATCTCCTTTCCCTGAAGTATGGCACACCATGGATGACAATG AAGAAAATTTGGATAAAACAACCATTGACAATCTAAACAAAATCCTGCAAGTCTTTGTGT TAGAATATCTTCATTTGTAATATTCTGATTTAGTTTATGGTTTGCATCTAGTATCACATT CAGAATTCAAGGAACCATTTTAAATAATCTGACTCCAAACAAATCTTATGTGGAAACTGC TACAGATTCATTCCATAGGTACCTTTGAGTATCCTAGATTTACATCATCTCCTAAATTGC TCATTAATTTTCATCTAGCTAAAGAGTGTAAGAAAAACTGAAGATAAATATCTTTTAAAG ACTCCTTTAGATACAATATGAAGCTAACTCAGATTCATATAGTCAGTATCATGGTTTCTA AATAGTACTTATATATGATGGTCATGTGAGATGCATAGACTTAGTTTTATGATTTTTTTT TTCACTTGGAATTTATACAAAACAGAGATGTAGTTTGAAGACTTACATTTCTTTGAGAAA TCTTTGTATGGTTTATTTCATGGAAATTAAATCAGAATTAAATGCCAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1132-1233, + strand, RNAz p=0.938281 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1132-1233, + strand, RNAz p=0.938281 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC047756, + | |
| 5' of BC047756, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-134, gnl|bosTau2|chr11 (15180458-15180591) | |
| 1-134, gnl|canFam2|chr17 (32819739-32820290) | |
| 1-134, gnl|echTel1|scaffold_279303 (607-36) | |
| 1-134, gnl|hg17|chr2 (37483268-37483810) | |
| 1-134, gnl|Hg17|chr2 (37483512-37483645) | |
| 1-134, gnl|loxAfr1|scaffold_221600 (993-481) | |
| 1-134, gnl|mm7|chr17 (77352275-77352818) | |
| 1-134, gnl|Mm7|chr17 (77352521-77352657) | |
| 1-134, gnl|monDom2|scaffold_23 (40076337-40077052) | |
| 1-134, gnl|oryCun1|scaffold_173812 (49784-49249) | |
| 1-134, gnl|panTro1|chr12 (38948993-38949535) | |
| 1-134, gnl|rheMac2|chr13 (37325628-37326158) | |
| 1-134, gnl|rn3|chr6 (1845777-1846324) | |
| 279-560, gnl|bosTau2|chr11 (15197267-15197548) | |
| 279-560, gnl|Hg17|chr2 (37498371-37498652) | |
| 279-560, gnl|Mm7|chr17 (77370882-77371163) | |
| 737-837, gnl|bosTau2|chr11 (15205882-15205982) | |
| 737-837, gnl|canFam2|chr17 (32840972-32841121) | |
| 737-837, gnl|danRer3|chrNA (92832427-92832281) | |
| 737-837, gnl|echTel1|scaffold_298565 (5942-5802) | |
| 737-837, gnl|fr1|chrUn (151276472-151276598) | |
| 737-837, gnl|galGal2|chr3 (29885183-29885332) | |
| 737-837, gnl|hg17|chr2 (37508452-37508601) | |
| 737-837, gnl|Hg17|chr2 (37508478-37508578) | |
| 737-837, gnl|loxAfr1|scaffold_74895 (7945-7796) | |
| 737-837, gnl|mm7|chr17 (77379651-77379799) | |
| 737-837, gnl|Mm7|chr17 (77379676-77379776) | |
| 737-837, gnl|monDom2|scaffold_23 (40108216-40108343) | |
| 737-837, gnl|panTro1|chr12 (38974263-38974414) | |
| 737-837, gnl|rheMac2|chr13 (37351105-37351254) | |
| 737-837, gnl|rn3|chr6 (1872383-1872531) | |
| 737-837, gnl|xenTro1|scaffold_371 (1159420-1159298) | |
| 953-1545, gnl|bosTau2|chr11 (15210513-15211146) | |
| 953-1545, gnl|Hg17|chr2 (37511474-37512114) | |
| 953-1545, gnl|Mm7|chr17 (77389494-77390090) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-134, gnl|bosTau2|chr11 (15180458-15180591) | |
| 1-134, gnl|canFam2|chr17 (32819739-32820290) | |
| 1-134, gnl|echTel1|scaffold_279303 (607-36) | |
| 1-134, gnl|hg17|chr2 (37483268-37483810) | |
| 1-134, gnl|Hg17|chr2 (37483512-37483645) | |
| 1-134, gnl|loxAfr1|scaffold_221600 (993-481) | |
| 1-134, gnl|mm7|chr17 (77352275-77352818) | |
| 1-134, gnl|Mm7|chr17 (77352521-77352657) | |
| 1-134, gnl|monDom2|scaffold_23 (40076337-40077052) | |
| 1-134, gnl|oryCun1|scaffold_173812 (49784-49249) | |
| 1-134, gnl|panTro1|chr12 (38948993-38949535) | |
| 1-134, gnl|rheMac2|chr13 (37325628-37326158) | |
| 1-134, gnl|rn3|chr6 (1845777-1846324) | |
| 279-560, gnl|bosTau2|chr11 (15197267-15197548) | |
| 279-560, gnl|Hg17|chr2 (37498371-37498652) | |
| 279-560, gnl|Mm7|chr17 (77370882-77371163) | |
| 737-837, gnl|bosTau2|chr11 (15205882-15205982) | |
| 737-837, gnl|canFam2|chr17 (32840972-32841121) | |
| 737-837, gnl|danRer3|chrNA (92832427-92832281) | |
| 737-837, gnl|echTel1|scaffold_298565 (5942-5802) | |
| 737-837, gnl|fr1|chrUn (151276472-151276598) | |
| 737-837, gnl|galGal2|chr3 (29885183-29885332) | |
| 737-837, gnl|hg17|chr2 (37508452-37508601) | |
| 737-837, gnl|Hg17|chr2 (37508478-37508578) | |
| 737-837, gnl|loxAfr1|scaffold_74895 (7945-7796) | |
| 737-837, gnl|mm7|chr17 (77379651-77379799) | |
| 737-837, gnl|Mm7|chr17 (77379676-77379776) | |
| 737-837, gnl|monDom2|scaffold_23 (40108216-40108343) | |
| 737-837, gnl|panTro1|chr12 (38974263-38974414) | |
| 737-837, gnl|rheMac2|chr13 (37351105-37351254) | |
| 737-837, gnl|rn3|chr6 (1872383-1872531) | |
| 737-837, gnl|xenTro1|scaffold_371 (1159420-1159298) | |
| 953-1545, gnl|bosTau2|chr11 (15210513-15211146) | |
| 953-1545, gnl|Hg17|chr2 (37511474-37512114) | |
| 953-1545, gnl|Mm7|chr17 (77389494-77390090) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| sug (1.27291) | |
| tra (0.984737) | |
| ret (0.643666) | |
| ski (0.440205) | |
| cbl (0.344392) | |
| cty (0.31224) | |
| cte (0.29274) | |
| kid (0.259471) | |
| pgl (0.236967) | |
| bfe (0.149858) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (1.27291) | |
| tra (0.984737) | |
| ret (0.643666) | |
| ski (0.440205) | |
| cbl (0.344392) | |
| cty (0.31224) | |
| cte (0.29274) | |
| kid (0.259471) | |
| pgl (0.236967) | |
| bfe (0.149858) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| jca (0.11396) | |
| spc (0.113366) |