Ss1.1-Mixn-0020j06.5
|
GGAAAGGTAAAGTGAGGAGCTCCACTTGGATGTGACCAGGTGGGTGTTAAGGTCTGGGAC
TAAGTGGGTCATCTGTAGAAGCAGTGGAGTGTGCTCTTTCCCTCCCTGCTCTGCTCCTCC
CTGTGGGACGATAACTCACTGTTTAGCTATATTTGGGGCTCAAGTTAGATTTGAAGGAGG
CCATGGAGCTTCTCTTTGGAAAGACTGCCTTTGCTAGTCTGCCTTTGGGGATTGGGCTTC
TGGTGTTCTCCCATGACATATCCTTTCCTGAAATCTTAAACCCTGGATCCTTCATGTTAA
GCCATGTCCCCAAGTTAGGAGTGCTAGGAAAGTTGGGCTTTAGAGTTGAATCTTGTGTTG
GTTCCCACCTTTTTTTATGCTATCTTCCTTCCCTTTAAGGGTTGTGTGGTTTTTTGGGTT
TTTTTTTTTAAGATGAGTAACTGCTGCTCTGAATTTGACTTCTTAGCACCACTTACTGAT
ACCTTCCATATGACACTGTAGTTGGTTTGATTCTTAGTTCAAAGACCAGTCTTGTCTAAA
AGTACAACTTTGTGGTCTGAGGGCAGGTTGTTACTCATCTTACGTGATTTTTGTCTTTTT
GTGGCATTTTGATTTACATCCATTGAAACATTCCGATCTTTAAGATGCCCACCTTTCTAA
TGAGGATATGATTCTCCTAGTGTAGAGATTACTCAAATGGAGCAGTCCTTATCCTCTCTC
CCATATTATGACCAGCTTGGATAGAGTTACTCAGACCTTGAGTCGCTGTTTCCCATCATT
TCCCAGGTGTTTGGTTCATGTTGTCTTCTGAAAATCACTTCCCATTGTTTTCTTTCCTCC
ACCACCTCCATTTGAGGTAATGGCACCTTGCCATTGGGTGGTTACGCTGTGCCTTTTCCT
CCCTGCAGAGTTCCTTTCCCATGACACTTTTCAGTTGGGCCGTCTTAAAACTCAACTGAT
GGGGAGGAAATTAACTTAATTTGGGAAAGACCACATTAAAATAGGTATTTTTGGGGGTGG |
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGAAAGGTAAAGTGAGGAGCTCCACTTGGATGTGACCAGGTGGGTGTTAAGGTCTGGGAC
TAAGTGGGTCATCTGTAGAAGCAGTGGAGTGTGCTCTTTCCCTCCCTGCTCTGCTCCTCC
CTGTGGGACGATAACTCACTGTTTAGCTATATTTGGGGCTCAAGTTAGATTTGAAGGAGG
CCATGGAGCTTCTCTTTGGAAAGACTGCCTTTGCTAGTCTGCCTTTGGGGATTGGGCTTC
TGGTGTTCTCCCATGACATATCCTTTCCTGAAATCTTAAACCCTGGATCCTTCATGTTAA
GCCATGTCCCCAAGTTAGGAGTGCTAGGAAAGTTGGGCTTTAGAGTTGAATCTTGTGTTG
GTTCCCACCTTTTTTTATGCTATCTTCCTTCCCTTTAAGGGTTGTGTGGTTTTTTGGGTT
TTTTTTTTTAAGATGAGTAACTGCTGCTCTGAATTTGACTTCTTAGCACCACTTACTGAT
ACCTTCCATATGACACTGTAGTTGGTTTGATTCTTAGTTCAAAGACCAGTCTTGTCTAAA
AGTACAACTTTGTGGTCTGAGGGCAGGTTGTTACTCATCTTACGTGATTTTTGTCTTTTT
GTGGCATTTTGATTTACATCCATTGAAACATTCCGATCTTTAAGATGCCCACCTTTCTAA
TGAGGATATGATTCTCCTAGTGTAGAGATTACTCAAATGGAGCAGTCCTTATCCTCTCTC
CCATATTATGACCAGCTTGGATAGAGTTACTCAGACCTTGAGTCGCTGTTTCCCATCATT
TCCCAGGTGTTTGGTTCATGTTGTCTTCTGAAAATCACTTCCCATTGTTTTCTTTCCTCC
ACCACCTCCATTTGAGGTAATGGCACCTTGCCATTGGGTGGTTACGCTGTGCCTTTTCCT
CCCTGCAGAGTTCCTTTCCCATGACACTTTTCAGTTGGGCCGTCTTAAAACTCAACTGAT
GGGGAGGAAATTAACTTAATTTGGGAAAGACCACATTAAAATAGGTATTTTTGGGGGTGG |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
773-1020, 529220 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM288247.1|),
blast E-value=7e-39, identity=84.92% |
|
773-1020, 4067184 BARC 10BOV Bos taurus cDNA clone 10BOV14_A01 5', mRNA
(gb|CK943350.1|), blast E-value=7e-39, identity=84.52% |
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773-971, Oa_splbn_11K12_M13reverse Sheep spleen\brain pSport1 library Ovis
(gb|CN822424.1|), blast E-value=1.4013e-45, identity=87.5% |
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746-1015, UMC-pd10en3-017-f02 Endometrium gilt D10 of estrous cycle pd10en
(gb|CO987538.1|), blast E-value=0, identity=100% |
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773-971, 1438640 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT885372.1|),
blast E-value=3e-38, identity=86% |
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773-1020, LB030108.CR_K12 GC_BGC-30 Bos taurus cDNA clone IMAGE
(gb|EE376440.1|), blast E-value=2e-36, identity=84.52% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
773-1020, 529220 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM288247.1|),
blast E-value=7e-39, identity=84.92% |
|
773-1020, 4067184 BARC 10BOV Bos taurus cDNA clone 10BOV14_A01 5', mRNA
(gb|CK943350.1|), blast E-value=7e-39, identity=84.52% |
|
773-971, Oa_splbn_11K12_M13reverse Sheep spleen\brain pSport1 library Ovis
(gb|CN822424.1|), blast E-value=1.4013e-45, identity=87.5% |
|
746-1015, UMC-pd10en3-017-f02 Endometrium gilt D10 of estrous cycle pd10en
(gb|CO987538.1|), blast E-value=0, identity=100% |
|
773-971, 1438640 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT885372.1|),
blast E-value=3e-38, identity=86% |
|
773-1020, LB030108.CR_K12 GC_BGC-30 Bos taurus cDNA clone IMAGE
(gb|EE376440.1|), blast E-value=2e-36, identity=84.52% |
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1-306, gnl|bosTau2|chr23 (23204984-23204675) |
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1-306, gnl|canFam2|chr12 (4038862-4039233) |
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1-306, gnl|dasNov1|scaffold_112098 (2713-2345) |
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1-306, gnl|hg17|chr6 (31610047-31610419) |
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1-306, gnl|loxAfr1|scaffold_44913 (13304-13670) |
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1-306, gnl|mm7|chr17 (33346226-33345899) |
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1-306, gnl|monDom2|scaffold_42 (17947420-17947029) |
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1-306, gnl|panTro1|chr5_random (24022983-24023355) |
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1-306, gnl|rheMac2|chr4 (31168671-31169044) |
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1-306, gnl|rn3|chr20 (3614843-3615170) |
| |
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326-1020, gnl|bosTau2|chr23 (23204474-23203755) |
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326-1020, gnl|Hg17|chr6 (31609645-31608802) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-306, gnl|bosTau2|chr23 (23204984-23204675) |
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1-306, gnl|canFam2|chr12 (4038862-4039233) |
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1-306, gnl|dasNov1|scaffold_112098 (2713-2345) |
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1-306, gnl|hg17|chr6 (31610047-31610419) |
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1-306, gnl|loxAfr1|scaffold_44913 (13304-13670) |
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1-306, gnl|mm7|chr17 (33346226-33345899) |
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1-306, gnl|monDom2|scaffold_42 (17947420-17947029) |
|
1-306, gnl|panTro1|chr5_random (24022983-24023355) |
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1-306, gnl|rheMac2|chr4 (31168671-31169044) |
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1-306, gnl|rn3|chr20 (3614843-3615170) |
| |
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326-1020, gnl|bosTau2|chr23 (23204474-23203755) |
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326-1020, gnl|Hg17|chr6 (31609645-31608802) |
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eep (0.245128) |
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ecc (0.23007) |
|
fty (0.17584) |
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nco (0.161734) |
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med (0.116252) |
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eje (0.0988338) |
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eep (0.245128) |
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ecc (0.23007) |
|
fty (0.17584) |
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nco (0.161734) |
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med (0.116252) |
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eje (0.0988338) |
