Ss1.1-Mixn-0020j19.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCGGACCAGGCGCGGGGAACATGGAGGCGCTGCTCAAGCGGGAGCTGGGCTACCGCTC CGTCAAGGCCGCCGGTCACTCGGGGGGCGGCTGCATTAGCCAAGGCCAGAGCTACGACAC GGACAGAGGACGAGTGTTTGTAAAAGTGAACACCAAGGCGGAGGCCAGAAGGATGTTTGA AGGCGAGCTGGCAAGTTTAACCGCCATCCTAAAGACGGGCACAGTGAGGGTGCCCAAGCC CATCAAAGTCCTGGACGCCCCCGGGGGCGGCAGCCTGCTGGTGATGGAGCATCTGGACAT GCGCTCCCTCGGCAGTCATGCCGCCACGCTTGGAGTCCAGCTGGCAGACCTACACCTGGA CAACAAGAGGCTTGGAGAGACTCTGCAGAAGGAGGCCGGCACCGTGGGGAAAGGAGGCGG GCAGGTGGAGCGGCCCTTTGTCGACCAGTTTGGGTTTGACGTGGTGACCTGCTGCGGGTA CCTCCCCCAGGTGAATGACTGGCAGAGTGACTGGGTCACATTCTATGCCCGGCAGCGCAT TCAGCCCCAGATGGAGCTGTTGGAGCAGGGGTCTGGGGACAGGGAGGCCCGCGAGCTCTG GGCCGCCCTGCAGTTGAAGATCCCGGACCTGTTCCGAGACCTGGACATCGTCCCGGCCCT GCTCCACGGAGACCTCTGGGGGGGAAACGTGGCGGAGGACCCCTCCGGGCCGGTCATTTT TGACCCTGCCTCCTTCTACGGTCACTCGGAGTACGAGCTGGCCATCGCCGGCATGTTCGG GGGCTTCAGCGGCGCCTTCTACTCCGCCTACCACGGCAGGGTCCCCAAGGCCCCCGGCTT CGAGAGGCGCCATCAGCTCTATCAGCTGTTCCACTACCTGAACCACTGGAACCACTTTGG GGCGGGGTACAGGGGCTCCTCCCTCAGCATCATGCGGAACCTCGTCAGATGAGCCCGCGC TCTCGGGAGGGGCCGGGTTCCGTCACCAGATCCCCGCCCCGACACCCCTCCTTCCTCCTT GGCCTCCCCTGGGCATCCTGCTTCACACCCTGGAGCAGCTCAGACCAGCTTTCCAGGCCC TGTCAGCACCTCGGGGGAAAAAAGGCTTTTTTGCCCTGCAGTTAGACTTTAAACTGCTCG ATAAAAAAGATAAAACTGCCCTAGAAACTGGATGTGAGCTGGGGACCCTGGGGGGCTGCA TCCAGCCTGCAGCTGCCCCCGAGGGAGGTAGCCCGTGGGCCCAGGTCACCTTCCCTTCTC CGTCACCTCTGGGCCTGCCGTGGGCTGGGCAGGTGCGGGCAGGCGGGCAGTGAGCACACC GCTGGCCTCAGTGTCCCTGGCCATGTGAGGCGCCGGTGGGCGAGTGCCGTTAGTGGCCCG TCGACTGCCAGTTCCTGAGGCCCGTGGAGTCTGGTCTCTTTGCATCGTGGGAACCAGCGC TGACCTGGTCTTCCGCCCTCGGTCTGGCGGTGACGAGAGGTCTCCATGAATGGCTTCCAC GTCCCTTTGGGCAAAACTGAGTAAGTTTTCAGTGGTTTCAGTGACGCGTGAGACTGTACT TCCCTTGTTTATTATAGCTCCTTGCCAGGGAACTTTGTGATACGTGGTGACAATAAACAG GTACTGCTATGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCGGACCAGGCGCGGGGAACATGGAGGCGCTGCTCAAGCGGGAGCTGGGCTACCGCTC CGTCAAGGCCGCCGGTCACTCGGGGGGCGGCTGCATTAGCCAAGGCCAGAGCTACGACAC GGACAGAGGACGAGTGTTTGTAAAAGTGAACACCAAGGCGGAGGCCAGAAGGATGTTTGA AGGCGAGCTGGCAAGTTTAACCGCCATCCTAAAGACGGGCACAGTGAGGGTGCCCAAGCC CATCAAAGTCCTGGACGCCCCCGGGGGCGGCAGCCTGCTGGTGATGGAGCATCTGGACAT GCGCTCCCTCGGCAGTCATGCCGCCACGCTTGGAGTCCAGCTGGCAGACCTACACCTGGA CAACAAGAGGCTTGGAGAGACTCTGCAGAAGGAGGCCGGCACCGTGGGGAAAGGAGGCGG GCAGGTGGAGCGGCCCTTTGTCGACCAGTTTGGGTTTGACGTGGTGACCTGCTGCGGGTA CCTCCCCCAGGTGAATGACTGGCAGAGTGACTGGGTCACATTCTATGCCCGGCAGCGCAT TCAGCCCCAGATGGAGCTGTTGGAGCAGGGGTCTGGGGACAGGGAGGCCCGCGAGCTCTG GGCCGCCCTGCAGTTGAAGATCCCGGACCTGTTCCGAGACCTGGACATCGTCCCGGCCCT GCTCCACGGAGACCTCTGGGGGGGAAACGTGGCGGAGGACCCCTCCGGGCCGGTCATTTT TGACCCTGCCTCCTTCTACGGTCACTCGGAGTACGAGCTGGCCATCGCCGGCATGTTCGG GGGCTTCAGCGGCGCCTTCTACTCCGCCTACCACGGCAGGGTCCCCAAGGCCCCCGGCTT CGAGAGGCGCCATCAGCTCTATCAGCTGTTCCACTACCTGAACCACTGGAACCACTTTGG GGCGGGGTACAGGGGCTCCTCCCTCAGCATCATGCGGAACCTCGTCAGATGAGCCCGCGC TCTCGGGAGGGGCCGGGTTCCGTCACCAGATCCCCGCCCCGACACCCCTCCTTCCTCCTT GGCCTCCCCTGGGCATCCTGCTTCACACCCTGGAGCAGCTCAGACCAGCTTTCCAGGCCC TGTCAGCACCTCGGGGGAAAAAAGGCTTTTTTGCCCTGCAGTTAGACTTTAAACTGCTCG ATAAAAAAGATAAAACTGCCCTAGAAACTGGATGTGAGCTGGGGACCCTGGGGGGCTGCA TCCAGCCTGCAGCTGCCCCCGAGGGAGGTAGCCCGTGGGCCCAGGTCACCTTCCCTTCTC CGTCACCTCTGGGCCTGCCGTGGGCTGGGCAGGTGCGGGCAGGCGGGCAGTGAGCACACC GCTGGCCTCAGTGTCCCTGGCCATGTGAGGCGCCGGTGGGCGAGTGCCGTTAGTGGCCCG TCGACTGCCAGTTCCTGAGGCCCGTGGAGTCTGGTCTCTTTGCATCGTGGGAACCAGCGC TGACCTGGTCTTCCGCCCTCGGTCTGGCGGTGACGAGAGGTCTCCATGAATGGCTTCCAC GTCCCTTTGGGCAAAACTGAGTAAGTTTTCAGTGGTTTCAGTGACGCGTGAGACTGTACT TCCCTTGTTTATTATAGCTCCTTGCCAGGGAACTTTGTGATACGTGGTGACAATAAACAG GTACTGCTATGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 3-168, gnl|bosTau2|chr19 (44157238-44157073) | |
| 3-168, gnl|Hg17|chr17 (78267904-78268066) | |
| 3-168, gnl|Mm7|chr11 (121530491-121530652) | |
| 313-436, gnl|bosTau2|chr19 (44152825-44152702) | |
| 313-436, gnl|Hg17|chr17 (78271434-78271556) | |
| 313-436, gnl|Mm7|chr11 (121534597-121534719) | |
| 606-957, gnl|bosTau2|chr19 (44150285-44149933) | |
| 606-957, gnl|canFam2|chrUn (11942434-11942791) | |
| 606-957, gnl|danRer3|chrUn (467670-468025) | |
| 606-957, gnl|dasNov1|scaffold_110992 (3599-3976) | |
| 606-957, gnl|echTel1|scaffold_306120 (5649-5296) | |
| 606-957, gnl|fr1|chrUn (127496749-127496388) | |
| 606-957, gnl|galGal2|chr18 (3192649-3192268) | |
| 606-957, gnl|hg17|chr17 (78277980-78278364) | |
| 606-957, gnl|Hg17|chr17 (78277987-78278350) | |
| 606-957, gnl|loxAfr1|scaffold_56680 (13608-13259) | |
| 606-957, gnl|mm7|chr11 (121538449-121538833) | |
| 606-957, gnl|Mm7|chr11 (121538456-121538808) | |
| 606-957, gnl|monDom2|scaffold_88 (1033655-1034013) | |
| 606-957, gnl|oryCun1|scaffold_132797 (6232-6610) | |
| 606-957, gnl|panTro1|chr19 (82070713-82071097) | |
| 606-957, gnl|rheMac2|chr16 (78206031-78206414) | |
| 606-957, gnl|rn3|chr10 (110668948-110669332) | |
| 606-957, gnl|tetNig1|chr3 (10807886-10807532) | |
| 606-957, gnl|xenTro1|scaffold_1373 (34174-34530) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-168, gnl|bosTau2|chr19 (44157238-44157073) | |
| 3-168, gnl|Hg17|chr17 (78267904-78268066) | |
| 3-168, gnl|Mm7|chr11 (121530491-121530652) | |
| 313-436, gnl|bosTau2|chr19 (44152825-44152702) | |
| 313-436, gnl|Hg17|chr17 (78271434-78271556) | |
| 313-436, gnl|Mm7|chr11 (121534597-121534719) | |
| 606-957, gnl|bosTau2|chr19 (44150285-44149933) | |
| 606-957, gnl|canFam2|chrUn (11942434-11942791) | |
| 606-957, gnl|danRer3|chrUn (467670-468025) | |
| 606-957, gnl|dasNov1|scaffold_110992 (3599-3976) | |
| 606-957, gnl|echTel1|scaffold_306120 (5649-5296) | |
| 606-957, gnl|fr1|chrUn (127496749-127496388) | |
| 606-957, gnl|galGal2|chr18 (3192649-3192268) | |
| 606-957, gnl|hg17|chr17 (78277980-78278364) | |
| 606-957, gnl|Hg17|chr17 (78277987-78278350) | |
| 606-957, gnl|loxAfr1|scaffold_56680 (13608-13259) | |
| 606-957, gnl|mm7|chr11 (121538449-121538833) | |
| 606-957, gnl|Mm7|chr11 (121538456-121538808) | |
| 606-957, gnl|monDom2|scaffold_88 (1033655-1034013) | |
| 606-957, gnl|oryCun1|scaffold_132797 (6232-6610) | |
| 606-957, gnl|panTro1|chr19 (82070713-82071097) | |
| 606-957, gnl|rheMac2|chr16 (78206031-78206414) | |
| 606-957, gnl|rn3|chr10 (110668948-110669332) | |
| 606-957, gnl|tetNig1|chr3 (10807886-10807532) | |
| 606-957, gnl|xenTro1|scaffold_1373 (34174-34530) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| eje (0.395335) | |
| ecc (0.23007) | |
| nje (0.16592) | |
| cli (0.152812) | |
| pty (0.142714) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.395335) | |
| ecc (0.23007) | |
| nje (0.16592) | |
| cli (0.152812) | |
| pty (0.142714) |