Non-Coding RNA Search

Ss1.1-Mixn-0020m19.5

Sequence:


               
               GGAGGATTGGGCTGTGAGGGGTTGTGTGTGGTTGTAGAGCCTTTCCTTTGTTGACTCAAG
GGTAACAGAAGTATCCCTGCAGGCCTGGAAATAGGAGGTTGCTTGCCTTTGCCTTTAAGG
CTGGGGTGGTGGTAGGAGGGCAGGGGAATGCTGCATGCTGCAGGATTTGATGGGTCTAGC
TCAGAACCCCAAACACTTGGCCCCTGCACCCACATCCCTTTGTTCCTACACACTACAGGC
TGGAAAACCTCCATGTGTAGTTAGGCAATTGTAGCGGTATTACTTGAGTCCCTGCTGTAT
GCACAGCTCTGTGGGAGATAGAGGGGTGGATACAGGGGAAGTCTGCTCCCTCTTCTCTAG
GTCCAAGGACTATAGGATCCGGAAATCAGTTGCCTGTAGTCTATTACAGTCTACAGGGTT
CAAGGTGATCATTATAGACAAATTTTATTAGGGACAGAAATTGATGTACTTTGGCTTCTG
TATCCAAACACAGAGCTTAGGGACTGGGCTGTTTGTCAGGTCTTATTACCTGTGTTGGGA
CCCAATAAGGATTTCTGTTCTACCAACTTATTACCAACCAGAGAAGCAGGTCTGTTGAAT
ACTTTGAGTTATAGAAGAATAAAAAGGAAAAGGAAAAAGTCAGAGCTAGTATGTCTCAGA
TGCCAGAGTTGATAAGAAGTGTGAGTGGTAGTGGTTGCAAAGTTGTGGTGGGAGAAGAAT
TAAAGCCACCAGACATGAGACTCGGATGCTAAACAATTCCTCCAGGAGAAGGTGGTGAAA
GATGTATTGCATGAAGTAATGGAGAAGCAAAAGGAGCAGCTGTTTGGTGAGTGCCTCCTA
GGACCCAATCATTTACTTCTCAAAATAATTTTTTGGGAGAACATTTATTTTGCTCATTTT
GACAGATGAGAAAACAGACTCAAAAGAGATTAAGTAACTTTCTCCAGATCACACAATTAG
TCATCAGTAGAGTCCAGAATCAAACCTAGAATCTGTAAGACTTCATTCTTTAAGACATTA
AACTATAAACTAATAATAGAAACTAATCTGAGATGTTATAGTTACAGAAGCCTTCAGTGA
CCTTAAAAGTACAGGGTAGTTATTTAACCCTTTTTTTCTGATTTTAGCATGGTTTAAGAA
TTTTGCAGTGTACAATACGGTGGCCACTAGCCACAAATGGCTTTTTAGCACTTGAAATAT
GCCTAGAGTCACATGTTGAGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGATTGGGCTGTGAGGGGTTGTGTGTGGTTGTAGAGCCTTTCCTTTGTTGACTCAAG
GGTAACAGAAGTATCCCTGCAGGCCTGGAAATAGGAGGTTGCTTGCCTTTGCCTTTAAGG
CTGGGGTGGTGGTAGGAGGGCAGGGGAATGCTGCATGCTGCAGGATTTGATGGGTCTAGC
TCAGAACCCCAAACACTTGGCCCCTGCACCCACATCCCTTTGTTCCTACACACTACAGGC
TGGAAAACCTCCATGTGTAGTTAGGCAATTGTAGCGGTATTACTTGAGTCCCTGCTGTAT
GCACAGCTCTGTGGGAGATAGAGGGGTGGATACAGGGGAAGTCTGCTCCCTCTTCTCTAG
GTCCAAGGACTATAGGATCCGGAAATCAGTTGCCTGTAGTCTATTACAGTCTACAGGGTT
CAAGGTGATCATTATAGACAAATTTTATTAGGGACAGAAATTGATGTACTTTGGCTTCTG
TATCCAAACACAGAGCTTAGGGACTGGGCTGTTTGTCAGGTCTTATTACCTGTGTTGGGA
CCCAATAAGGATTTCTGTTCTACCAACTTATTACCAACCAGAGAAGCAGGTCTGTTGAAT
ACTTTGAGTTATAGAAGAATAAAAAGGAAAAGGAAAAAGTCAGAGCTAGTATGTCTCAGA
TGCCAGAGTTGATAAGAAGTGTGAGTGGTAGTGGTTGCAAAGTTGTGGTGGGAGAAGAAT
TAAAGCCACCAGACATGAGACTCGGATGCTAAACAATTCCTCCAGGAGAAGGTGGTGAAA
GATGTATTGCATGAAGTAATGGAGAAGCAAAAGGAGCAGCTGTTTGGTGAGTGCCTCCTA
GGACCCAATCATTTACTTCTCAAAATAATTTTTTGGGAGAACATTTATTTTGCTCATTTT
GACAGATGAGAAAACAGACTCAAAAGAGATTAAGTAACTTTCTCCAGATCACACAATTAG
TCATCAGTAGAGTCCAGAATCAAACCTAGAATCTGTAAGACTTCATTCTTTAAGACATTA
AACTATAAACTAATAATAGAAACTAATCTGAGATGTTATAGTTACAGAAGCCTTCAGTGA
CCTTAAAAGTACAGGGTAGTTATTTAACCCTTTTTTTCTGATTTTAGCATGGTTTAAGAA
TTTTGCAGTGTACAATACGGTGGCCACTAGCCACAAATGGCTTTTTAGCACTTGAAATAT
GCCTAGAGTCACATGTTGAGATGA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               456-575, - strand, RNAz p=0.818806
               

               
               806-959, - strand, RNAz p=0.990688
               

               
               1107-1222, - strand, RNAz p=0.973946

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               456-575, - strand, RNAz p=0.818806
               

               
               806-959, - strand, RNAz p=0.990688
               

               
               1107-1222, - strand, RNAz p=0.973946

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               824-921, + strand, RNAmicro p=0.979554

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               824-921, + strand, RNAmicro p=0.979554

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               8-334, gnl|bosTau2|chr24 (37191032-37191356)
               

               
               8-334, gnl|Hg17|chr18 (46046253-46045929)
               

               
               8-334, gnl|Mm7|chr18 (74677974-74678290)
               


               
               343-1222, gnl|bosTau2|chr24 (37191606-37192459)
               

               
               343-1222, gnl|canFam2|chr7 (81663693-81662642)
               

               
               343-1222, gnl|dasNov1|scaffold_101553 (980-1971)
               

               
               343-1222, gnl|hg17|chr18 (46044339-46045360)
               

               
               343-1222, gnl|Hg17|chr18 (46045355-46044499)
               

               
               343-1222, gnl|loxAfr1|scaffold_42618 (9399-8362)
               

               
               343-1222, gnl|mm7|chr18 (74679265-74678475)
               

               
               343-1222, gnl|oryCun1|scaffold_148539 (13541-12602)
               

               
               343-1222, gnl|panTro1|chr17 (42625708-42626728)
               

               
               343-1222, gnl|rheMac2|chr18 (43342062-43343087)
               

               
               343-1222, gnl|rn3|chr18 (71158858-71158081)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-334, gnl|bosTau2|chr24 (37191032-37191356)
               

               
               8-334, gnl|Hg17|chr18 (46046253-46045929)
               

               
               8-334, gnl|Mm7|chr18 (74677974-74678290)
               


               
               343-1222, gnl|bosTau2|chr24 (37191606-37192459)
               

               
               343-1222, gnl|canFam2|chr7 (81663693-81662642)
               

               
               343-1222, gnl|dasNov1|scaffold_101553 (980-1971)
               

               
               343-1222, gnl|hg17|chr18 (46044339-46045360)
               

               
               343-1222, gnl|Hg17|chr18 (46045355-46044499)
               

               
               343-1222, gnl|loxAfr1|scaffold_42618 (9399-8362)
               

               
               343-1222, gnl|mm7|chr18 (74679265-74678475)
               

               
               343-1222, gnl|oryCun1|scaffold_148539 (13541-12602)
               

               
               343-1222, gnl|panTro1|chr17 (42625708-42626728)
               

               
               343-1222, gnl|rheMac2|chr18 (43342062-43343087)
               

               
               343-1222, gnl|rn3|chr18 (71158858-71158081)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fat (0.294855)
               

               
               hea (0.204499)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               hea (0.204499)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	456-575, - strand, RNAz p=0.818806
	806-959, - strand, RNAz p=0.990688
	1107-1222, - strand, RNAz p=0.973946

	8-334, gnl\|bosTau2\|chr24 (37191032-37191356)
	8-334, gnl\|Hg17\|chr18 (46046253-46045929)
	8-334, gnl\|Mm7\|chr18 (74677974-74678290)

	343-1222, gnl\|bosTau2\|chr24 (37191606-37192459)
	343-1222, gnl\|canFam2\|chr7 (81663693-81662642)
	343-1222, gnl\|dasNov1\|scaffold_101553 (980-1971)
	343-1222, gnl\|hg17\|chr18 (46044339-46045360)
	343-1222, gnl\|Hg17\|chr18 (46045355-46044499)
	343-1222, gnl\|loxAfr1\|scaffold_42618 (9399-8362)
	343-1222, gnl\|mm7\|chr18 (74679265-74678475)
	343-1222, gnl\|oryCun1\|scaffold_148539 (13541-12602)
	343-1222, gnl\|panTro1\|chr17 (42625708-42626728)
	343-1222, gnl\|rheMac2\|chr18 (43342062-43343087)
	343-1222, gnl\|rn3\|chr18 (71158858-71158081)

	fat (0.294855)
	hea (0.204499)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)