Ss1.1-Mixn-0020o05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTAGACCGAGTGCCAGAGGAGGAGAAGGACACCAACGTCCAAGTGCTCATGGTGCTGGG AGCGGGCCGGGGGCCCCTGGTGAATGCCTCCCTGCGGGCAGCCAAGCAGGCTGACCGGCG GATAAAGCTGTACGCTGTGGAGAAGAACCCAAATGCTGTGGTGACGCTGGAGAATTGGCA GTTTGAAGAATGGGGAAGCCAGGTGACAGTAGTCTCCTCGGACATGCGGGAATGGGTGGC TCCAGAGAAAGCAGATATCATTGTCAGTGAGCTTCTGGGGTCCTTCGCTGACAATGAGCT GTCACCCGAGTGCCTGGATGGAGCCCAGCACTTCTTAAAAGATGATGGCGTGAGCATCCC TGGGGAATACACCTCCTTTCTAGCTCCCATCTCCTCCTCCAAGTTGTACAATGAGGTTCG AGCCTGTCGGGAAAAAGACCGTGACCCTGAGGCCCAGTTTGAGATGCCTTATGTGGTACG GCTGCACAACTTCCACCAGCTCTCTGCTCCCCAGCCCTGTTTTACCTTCAGCCACCCCAA CAGAGATCCTATGGTTGACAACAACCGGTACTGCACCTTGGAGTTTCCTGTGGAGGTGAA CACAGTGCTGCATGGCTTTGCAGGCTACTTTGAGACGGTGCTTTATCAGGACATCACTCT GAGTATCCGTCCAGAGACTCACTCCCCTGGGATGTTCTCATGGTTTCCCATCCTCTTCCC CATTAAGCAGCCTATTACAGTGCGTGAAGGCCAGACCATCTGTGTCCGTTTCTGGCGATG CAGCAATTCCAAGAAGGTGTGGTATGAGTGGGCTGTGACAGCACCTGTCTGTTCTGCTAT TCACAACCCCACAGGCCGCTCCTACACCATTGGCCTCTAGCCCTGCCTGCAAGTGTCTAA AACCTTAGAAGCAGCTTCAGGTTCTACTCCTGTAGCACAGAAGGTGCAGTACACCATGGG TTCTGATTTGCCTTGCCCATCAGAGAGGAGCATTTCAGTCAGCTTTCCTACCTTAGGCCA TGGGCAAAGGGTGAGAATTGCAGGGCTTGCGCTGCCAACCTGTGAAGACCTCTGGCTAAG GCATGAGGAGTTTGTGCTGGATCTGAGGCTGCTCCAACAGGCACTCAGCCTCAAGTGCTC CCTGGAATAGCCCTGAGAACATGTGGATTGAACAAATTTTCAGCCTTTTTCCCTGCCCAT CTCTGTTCCTGTTTTGGTGGTTTTGTGTAAGGAGGAAATACAAATAAAGTGAAGTTATGG CCTTTCCTGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTAGACCGAGTGCCAGAGGAGGAGAAGGACACCAACGTCCAAGTGCTCATGGTGCTGGG AGCGGGCCGGGGGCCCCTGGTGAATGCCTCCCTGCGGGCAGCCAAGCAGGCTGACCGGCG GATAAAGCTGTACGCTGTGGAGAAGAACCCAAATGCTGTGGTGACGCTGGAGAATTGGCA GTTTGAAGAATGGGGAAGCCAGGTGACAGTAGTCTCCTCGGACATGCGGGAATGGGTGGC TCCAGAGAAAGCAGATATCATTGTCAGTGAGCTTCTGGGGTCCTTCGCTGACAATGAGCT GTCACCCGAGTGCCTGGATGGAGCCCAGCACTTCTTAAAAGATGATGGCGTGAGCATCCC TGGGGAATACACCTCCTTTCTAGCTCCCATCTCCTCCTCCAAGTTGTACAATGAGGTTCG AGCCTGTCGGGAAAAAGACCGTGACCCTGAGGCCCAGTTTGAGATGCCTTATGTGGTACG GCTGCACAACTTCCACCAGCTCTCTGCTCCCCAGCCCTGTTTTACCTTCAGCCACCCCAA CAGAGATCCTATGGTTGACAACAACCGGTACTGCACCTTGGAGTTTCCTGTGGAGGTGAA CACAGTGCTGCATGGCTTTGCAGGCTACTTTGAGACGGTGCTTTATCAGGACATCACTCT GAGTATCCGTCCAGAGACTCACTCCCCTGGGATGTTCTCATGGTTTCCCATCCTCTTCCC CATTAAGCAGCCTATTACAGTGCGTGAAGGCCAGACCATCTGTGTCCGTTTCTGGCGATG CAGCAATTCCAAGAAGGTGTGGTATGAGTGGGCTGTGACAGCACCTGTCTGTTCTGCTAT TCACAACCCCACAGGCCGCTCCTACACCATTGGCCTCTAGCCCTGCCTGCAAGTGTCTAA AACCTTAGAAGCAGCTTCAGGTTCTACTCCTGTAGCACAGAAGGTGCAGTACACCATGGG TTCTGATTTGCCTTGCCCATCAGAGAGGAGCATTTCAGTCAGCTTTCCTACCTTAGGCCA TGGGCAAAGGGTGAGAATTGCAGGGCTTGCGCTGCCAACCTGTGAAGACCTCTGGCTAAG GCATGAGGAGTTTGTGCTGGATCTGAGGCTGCTCCAACAGGCACTCAGCCTCAAGTGCTC CCTGGAATAGCCCTGAGAACATGTGGATTGAACAAATTTTCAGCCTTTTTCCCTGCCCAT CTCTGTTCCTGTTTTGGTGGTTTTGTGTAAGGAGGAAATACAAATAAAGTGAAGTTATGG CCTTTCCTGCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 168-344, + strand, RNAz p=0.938175 | |
| 168-266, + strand, RNAz p=0.746696 | |
| 832-949, - strand, RNAz p=0.564165 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 168-344, + strand, RNAz p=0.938175 | |
| 168-266, + strand, RNAz p=0.746696 | |
| 832-949, - strand, RNAz p=0.564165 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 43-166, gnl|bosTau2|chr10 (14110902-14111025) | |
| 43-166, gnl|canFam2|chr8 (6255393-6255541) | |
| 43-166, gnl|danRer3|chr2 (34035177-34035030) | |
| 43-166, gnl|dasNov1|scaffold_16655 (41167-41315) | |
| 43-166, gnl|echTel1|scaffold_305738 (10493-10338) | |
| 43-166, gnl|fr1|chrUn (36765928-36765784) | |
| 43-166, gnl|hg17|chr14 (22463311-22463458) | |
| 43-166, gnl|Hg17|chr14 (22463441-22463318) | |
| 43-166, gnl|loxAfr1|scaffold_17053 (45902-45757) | |
| 43-166, gnl|mm7|chr14 (49378866-49379011) | |
| 43-166, gnl|Mm7|chr14 (49378996-49378873) | |
| 43-166, gnl|monDom2|scaffold_12 (26926014-26925867) | |
| 43-166, gnl|oryCun1|scaffold_201448 (41527-41383) | |
| 43-166, gnl|panTro1|chr15 (21427049-21427196) | |
| 43-166, gnl|rheMac2|chr7 (85743832-85743979) | |
| 43-166, gnl|rn3|chr15 (32594360-32594504) | |
| 43-166, gnl|tetNig1|chr15 (2087823-2087678) | |
| 43-166, gnl|xenTro1|scaffold_963 (302473-302614) | |
| 168-344, gnl|bosTau2|chr10 (14111109-14111285) | |
| 168-344, gnl|canFam2|chr8 (6255121-6255359) | |
| 168-344, gnl|danRer3|chr2 (34037896-34037684) | |
| 168-344, gnl|dasNov1|scaffold_16655 (40896-41133) | |
| 168-344, gnl|echTel1|scaffold_305738 (10750-10517) | |
| 168-344, gnl|fr1|chrUn (36766187-36765969) | |
| 168-344, gnl|hg17|chr14 (22463041-22463277) | |
| 168-344, gnl|Hg17|chr14 (22463230-22463054) | |
| 168-344, gnl|loxAfr1|scaffold_17053 (46172-45936) | |
| 168-344, gnl|mm7|chr14 (49378596-49378833) | |
| 168-344, gnl|Mm7|chr14 (49378785-49378609) | |
| 168-344, gnl|monDom2|scaffold_12 (26926301-26926048) | |
| 168-344, gnl|oryCun1|scaffold_201448 (41795-41558) | |
| 168-344, gnl|panTro1|chr15 (21426779-21427015) | |
| 168-344, gnl|rheMac2|chr7 (85743562-85743798) | |
| 168-344, gnl|rn3|chr15 (32594089-32594326) | |
| 168-344, gnl|tetNig1|chr15 (2088069-2087864) | |
| 168-344, gnl|xenTro1|scaffold_963 (302165-302397) | |
| 544-664, gnl|bosTau2|chr10 (14112756-14112876) | |
| 544-664, gnl|Hg17|chr14 (22461610-22461490) | |
| 544-664, gnl|Mm7|chr14 (49377140-49377020) | |
| 714-1272, gnl|bosTau2|chr10 (14114135-14114694) | |
| 714-1272, gnl|Hg17|chr14 (22460120-22459578) | |
| 714-1272, gnl|Mm7|chr14 (49375695-49374920) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-166, gnl|bosTau2|chr10 (14110902-14111025) | |
| 43-166, gnl|canFam2|chr8 (6255393-6255541) | |
| 43-166, gnl|danRer3|chr2 (34035177-34035030) | |
| 43-166, gnl|dasNov1|scaffold_16655 (41167-41315) | |
| 43-166, gnl|echTel1|scaffold_305738 (10493-10338) | |
| 43-166, gnl|fr1|chrUn (36765928-36765784) | |
| 43-166, gnl|hg17|chr14 (22463311-22463458) | |
| 43-166, gnl|Hg17|chr14 (22463441-22463318) | |
| 43-166, gnl|loxAfr1|scaffold_17053 (45902-45757) | |
| 43-166, gnl|mm7|chr14 (49378866-49379011) | |
| 43-166, gnl|Mm7|chr14 (49378996-49378873) | |
| 43-166, gnl|monDom2|scaffold_12 (26926014-26925867) | |
| 43-166, gnl|oryCun1|scaffold_201448 (41527-41383) | |
| 43-166, gnl|panTro1|chr15 (21427049-21427196) | |
| 43-166, gnl|rheMac2|chr7 (85743832-85743979) | |
| 43-166, gnl|rn3|chr15 (32594360-32594504) | |
| 43-166, gnl|tetNig1|chr15 (2087823-2087678) | |
| 43-166, gnl|xenTro1|scaffold_963 (302473-302614) | |
| 168-344, gnl|bosTau2|chr10 (14111109-14111285) | |
| 168-344, gnl|canFam2|chr8 (6255121-6255359) | |
| 168-344, gnl|danRer3|chr2 (34037896-34037684) | |
| 168-344, gnl|dasNov1|scaffold_16655 (40896-41133) | |
| 168-344, gnl|echTel1|scaffold_305738 (10750-10517) | |
| 168-344, gnl|fr1|chrUn (36766187-36765969) | |
| 168-344, gnl|hg17|chr14 (22463041-22463277) | |
| 168-344, gnl|Hg17|chr14 (22463230-22463054) | |
| 168-344, gnl|loxAfr1|scaffold_17053 (46172-45936) | |
| 168-344, gnl|mm7|chr14 (49378596-49378833) | |
| 168-344, gnl|Mm7|chr14 (49378785-49378609) | |
| 168-344, gnl|monDom2|scaffold_12 (26926301-26926048) | |
| 168-344, gnl|oryCun1|scaffold_201448 (41795-41558) | |
| 168-344, gnl|panTro1|chr15 (21426779-21427015) | |
| 168-344, gnl|rheMac2|chr7 (85743562-85743798) | |
| 168-344, gnl|rn3|chr15 (32594089-32594326) | |
| 168-344, gnl|tetNig1|chr15 (2088069-2087864) | |
| 168-344, gnl|xenTro1|scaffold_963 (302165-302397) | |
| 544-664, gnl|bosTau2|chr10 (14112756-14112876) | |
| 544-664, gnl|Hg17|chr14 (22461610-22461490) | |
| 544-664, gnl|Mm7|chr14 (49377140-49377020) | |
| 714-1272, gnl|bosTau2|chr10 (14114135-14114694) | |
| 714-1272, gnl|Hg17|chr14 (22460120-22459578) | |
| 714-1272, gnl|Mm7|chr14 (49375695-49374920) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| elu (0.385356) | |
| eye (0.341006) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| ill (0.175593) | |
| csp (0.161186) | |
| nca (0.136874) | |
| cov (0.132153) | |
| tra (0.123092) | |
| eep (0.122564) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| eye (0.341006) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| ill (0.175593) | |
| csp (0.161186) | |
| nca (0.136874) | |
| cov (0.132153) | |
| tra (0.123092) | |
| eep (0.122564) | |
| nbm (0.0993246) |