Non-Coding RNA Search

Ss1.1-Mixn-0020o08.5

Sequence:


               
               GGCAGCGGGTGGAAGGGTCTGAGCTGCGTCTGGTGGTGCTGGCAGTGCCATCGCCATGGG
ACAGATCGAGTGGGCCATGTGGGCCAACGAGCAGGCGCTGGCGTCTGGCCTGATCCTCAT
GACAGGGGGCATCGTGGCCACGGCCGGCCAGTTCACGCAGTGGTACCTGGGCACCTACTC
CATTGCGGCGGGCGTGTTGGTCTGCCTGCTGGAGTACCCCCGCGGGCGGAGGACCAAGGG
CTCCACCATGGAGCGCTGCGGACAAAAGTACATGACCAAAGTGGTGAAGGCGTTCGGGCC
CCTCTCCAGGAACTACTACATCCGGGCCTTCCTGCACCTCGGGCTGTCGGTACCTGCTGG
CTTCCTGCTGGCCACCATCCTGGGCACAGCCTGCTTGGCCATCGCAAGCGGCATCTACCT
GCTGGCAGCCATCCGTGGGGAACAGTGGACCCCCATCGAGCCCAAGCCTAAGGAGCGGCC
ACAGGTGGGTGGCACCATCAAGCAGCCGCCCAGCAACCCCCCACCCCGGCCCCCAGCCGA
GGCCCGCAAGAAGCCAGGCGAGGAGGCAGTGGCAGGGGTCCCTACGGGGGGCCCCCAGGA
AAACCCCATGCCAGTGACCGACGAGGTTGTGTGACCAGGGCCTCTAGCGGCTCCCCACCC
TGCTGAAGCTTCAAGGGCTCTTTCTGCAGGAGGGCGGCATGTGTGGGAGGCCCCCGGCCC
TGGGGCACCCCTTTCCTGCAGTCCCCTTTCGGGTTGACTGGTAGCCGTGCTGTCATCTTT
CTAGGGGGCCTTGGGGTCTTGGTGAATCAGCTGTTTCATGAAATATGTATCTGGAATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCGGGTGGAAGGGTCTGAGCTGCGTCTGGTGGTGCTGGCAGTGCCATCGCCATGGG
ACAGATCGAGTGGGCCATGTGGGCCAACGAGCAGGCGCTGGCGTCTGGCCTGATCCTCAT
GACAGGGGGCATCGTGGCCACGGCCGGCCAGTTCACGCAGTGGTACCTGGGCACCTACTC
CATTGCGGCGGGCGTGTTGGTCTGCCTGCTGGAGTACCCCCGCGGGCGGAGGACCAAGGG
CTCCACCATGGAGCGCTGCGGACAAAAGTACATGACCAAAGTGGTGAAGGCGTTCGGGCC
CCTCTCCAGGAACTACTACATCCGGGCCTTCCTGCACCTCGGGCTGTCGGTACCTGCTGG
CTTCCTGCTGGCCACCATCCTGGGCACAGCCTGCTTGGCCATCGCAAGCGGCATCTACCT
GCTGGCAGCCATCCGTGGGGAACAGTGGACCCCCATCGAGCCCAAGCCTAAGGAGCGGCC
ACAGGTGGGTGGCACCATCAAGCAGCCGCCCAGCAACCCCCCACCCCGGCCCCCAGCCGA
GGCCCGCAAGAAGCCAGGCGAGGAGGCAGTGGCAGGGGTCCCTACGGGGGGCCCCCAGGA
AAACCCCATGCCAGTGACCGACGAGGTTGTGTGACCAGGGCCTCTAGCGGCTCCCCACCC
TGCTGAAGCTTCAAGGGCTCTTTCTGCAGGAGGGCGGCATGTGTGGGAGGCCCCCGGCCC
TGGGGCACCCCTTTCCTGCAGTCCCCTTTCGGGTTGACTGGTAGCCGTGCTGTCATCTTT
CTAGGGGGCCTTGGGGTCTTGGTGAATCAGCTGTTTCATGAAATATGTATCTGGAATTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CY24A_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               CY24A_PIG

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               418-840, gnl|bosTau2|chr18 (12697473-12697880)
               

               
               418-840, gnl|Hg17|chr16 (87237487-87237007)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               418-840, gnl|bosTau2|chr18 (12697473-12697880)
               

               
               418-840, gnl|Hg17|chr16 (87237487-87237007)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               ill (0.702371)
               

               
               jej (0.494609)
               

               
               cly (0.482567)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               cov (0.396458)
               

               
               eep (0.367692)
               

               
               nje (0.33184)
               

               
               eje (0.296501)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.702371)
               

               
               jej (0.494609)
               

               
               cly (0.482567)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               cov (0.396458)
               

               
               eep (0.367692)
               

               
               nje (0.33184)
               

               
               eje (0.296501)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

	418-840, gnl\|bosTau2\|chr18 (12697473-12697880)
	418-840, gnl\|Hg17\|chr16 (87237487-87237007)

	ill (0.702371)
	jej (0.494609)
	cly (0.482567)
	lnt (0.426925)
	amn (0.417711)
	cov (0.396458)
	eep (0.367692)
	nje (0.33184)
	eje (0.296501)
	cga (0.279096)
	nmm (0.265604)
	med (0.232504)
	jca (0.22792)
	col (0.195008)
	fbs (0.175346)
	cki (0.165235)
	cje (0.165235)
	nco (0.161734)
	cli (0.152812)
	cag (0.151194)
	hyp (0.142837)
	cst (0.140036)
	nca (0.136874)
	ute (0.132784)
	ese (0.126502)
	cty (0.10408)