Non-Coding RNA Search

Ss1.1-Mixn-0020o18.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTAATTGTTTTATTTATTTAAATATGAA
AACATTTCATTTCTTCCCAGTTAGTCTGAAAGATGGTCCCTGGGGAATTAAAAGATCATG
GTCGGCTTGGGGGTCAGAGGGCAGCAGGATGACTCTCCCTGGAGCATCCAGGGTTCTGGC
CTGATCCCAGGGGAGATGCCTCTGGTTTTAGAAAAGCCGTGACTCCTGTCTACCCCACCT
TGTGCCTTGATGCCTCTTCTGCTAAGAGGGGCAGTGGGGGCGGGGAAAGCGGGAGCCAGG
GGAGAGGTTCAGCACCACCGTGGTCCTGGTCCCCCAGACTCCGCTCCAGGCCCTTAGCCG
CCCAGTGAACCCCTCCAGACAGGGCAACATCAGCCAGGGCAGAAAACCAACAGCCCCCTC
CCCCCAAAACCAGTACTGGGCCCTCTTGGGGCCTGGCTCCTTCAGTGGAGATGAGGAAGA
ACCGCCCTCAGTGGGGCTCCTGGTCACAGCTCACTGCGTGTCACCTTGGCCACGATCACC
AGCTTGGACAGCTCAGCCTTGAAGGCCCCAGGCCTGTGGGACACTGCTGTTTTGGTCACT
TCAAATTCCTCACTTTTCAGGGGCACTTCGCTCTCTCTTTCAAAAGCGGCTTTCGAGTAG
GCCATGCCATATTCGATCTCGGCGCCCCGCACCTCTGCCTTGAATTGCGTGAAGTACAGG
TAGGACTTGCCCTGGGGCCTCCAGATGGTGCAGGTGAAGTGCTGGTGGTCTTCACTGGTC
CCCAAACTCATCTGCCACTTCTCATTCGTCCCTCCTTGGGATGCATAGGTGAACACACAG
GTATATTTGTTCCCAGGGCCCACGTTCTGGGAGAAAGAATGAACTACGCCGCCGGGCCGC
ACGTCAAAGGCCACCGTCGTGGGCTCGGACACCGTCTCCGCCGGCCTCAGAGCAACAGCC
GCCAAGAGCAGCGCGGCCCACAAGCTCGCGCCGCCGCCGCCATTCCTTCTTCCGCTGGGC
GCCGCCATCTTGGGATCAGGTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTAATTGTTTTATTTATTTAAATATGAA
AACATTTCATTTCTTCCCAGTTAGTCTGAAAGATGGTCCCTGGGGAATTAAAAGATCATG
GTCGGCTTGGGGGTCAGAGGGCAGCAGGATGACTCTCCCTGGAGCATCCAGGGTTCTGGC
CTGATCCCAGGGGAGATGCCTCTGGTTTTAGAAAAGCCGTGACTCCTGTCTACCCCACCT
TGTGCCTTGATGCCTCTTCTGCTAAGAGGGGCAGTGGGGGCGGGGAAAGCGGGAGCCAGG
GGAGAGGTTCAGCACCACCGTGGTCCTGGTCCCCCAGACTCCGCTCCAGGCCCTTAGCCG
CCCAGTGAACCCCTCCAGACAGGGCAACATCAGCCAGGGCAGAAAACCAACAGCCCCCTC
CCCCCAAAACCAGTACTGGGCCCTCTTGGGGCCTGGCTCCTTCAGTGGAGATGAGGAAGA
ACCGCCCTCAGTGGGGCTCCTGGTCACAGCTCACTGCGTGTCACCTTGGCCACGATCACC
AGCTTGGACAGCTCAGCCTTGAAGGCCCCAGGCCTGTGGGACACTGCTGTTTTGGTCACT
TCAAATTCCTCACTTTTCAGGGGCACTTCGCTCTCTCTTTCAAAAGCGGCTTTCGAGTAG
GCCATGCCATATTCGATCTCGGCGCCCCGCACCTCTGCCTTGAATTGCGTGAAGTACAGG
TAGGACTTGCCCTGGGGCCTCCAGATGGTGCAGGTGAAGTGCTGGTGGTCTTCACTGGTC
CCCAAACTCATCTGCCACTTCTCATTCGTCCCTCCTTGGGATGCATAGGTGAACACACAG
GTATATTTGTTCCCAGGGCCCACGTTCTGGGAGAAAGAATGAACTACGCCGCCGGGCCGC
ACGTCAAAGGCCACCGTCGTGGGCTCGGACACCGTCTCCGCCGGCCTCAGAGCAACAGCC
GCCAAGAGCAGCGCGGCCCACAAGCTCGCGCCGCCGCCGCCATTCCTTCTTCCGCTGGGC
GCCGCCATCTTGGGATCAGGTGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46405153|gb|AAS93436.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46405153|gb|AAS93436.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               321-546, - strand, RNAz p=0.706113

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-546, - strand, RNAz p=0.706113

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_019107, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_019107, -

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               29-587, gnl|bosTau2|chr7 (15266167-15266740)
               

               
               29-587, gnl|Hg17|chr19 (4608560-4609100)
               


               
               852-1044, gnl|bosTau2|chr7 (15277762-15277954)
               

               
               852-1044, gnl|Hg17|chr19 (4621173-4621362)
               

               
               852-1044, gnl|Mm7|chr17 (54341988-54342148)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-587, gnl|bosTau2|chr7 (15266167-15266740)
               

               
               29-587, gnl|Hg17|chr19 (4608560-4609100)
               


               
               852-1044, gnl|bosTau2|chr7 (15277762-15277954)
               

               
               852-1044, gnl|Hg17|chr19 (4621173-4621362)
               

               
               852-1044, gnl|Mm7|chr17 (54341988-54342148)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               nje (0.49776)
               

               
               ece (0.45861)
               

               
               cly (0.361925)
               

               
               med (0.348756)
               

               
               duo (0.345602)
               

               
               csp (0.322373)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.49776)
               

               
               ece (0.45861)
               

               
               cly (0.361925)
               

               
               med (0.348756)
               

               
               duo (0.345602)
               

               
               csp (0.322373)
               

               
               cga (0.279096)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	29-587, gnl\|bosTau2\|chr7 (15266167-15266740)
	29-587, gnl\|Hg17\|chr19 (4608560-4609100)

	852-1044, gnl\|bosTau2\|chr7 (15277762-15277954)
	852-1044, gnl\|Hg17\|chr19 (4621173-4621362)
	852-1044, gnl\|Mm7\|chr17 (54341988-54342148)

	nje (0.49776)
	ece (0.45861)
	cly (0.361925)
	med (0.348756)
	duo (0.345602)
	csp (0.322373)
	cga (0.279096)
	pla (0.267344)
	pgl (0.236967)
	ecc (0.23007)
	fli (0.202881)
	col (0.195008)
	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	mcp (0.170648)
	cag (0.151194)
	nmm (0.132802)
	ute (0.132784)
	eep (0.122564)
	ebs (0.118301)
	jej (0.0989218)
	eje (0.0988338)