Non-Coding RNA Search

Ss1.1-Mixn-0020o20.5

Sequence:


               
               GACCATCTCCCAGCCTGGGGCAGGGATCCAGGCATCTGCTTGAGCCCCAGTGCACCTTGC
ACTTGAACTATCTGGGGTTTGGTGGGCAGAGGCTCAAGAGTTTCCTGAGTTCCCCAGCTG
GTGTCCTGTGACATGGTCTGCCTCAGGGCGGGGGTAGCATGGGGTCCCTCTGAGGACCCA
GATTCTGGTACTAGGGGGTGGGGAGGGGAACCTGGACCTCGGCCTTCCCCAGCCTTCGGC
CTGAGCCCGGCATGCTCCAGGCTCCCCGGTCCCCATGAAGCCTGCAGGGGCTGCAGGAGG
GTTAGGAGGGCTGGACCCTAGACTCCCTTCCTATCCCTGCCTGCCTTTTCCCCTCTTCCT
TGCAAGCTCCTTGCCTCTGGTCTGAATTAGTTGGTGCCTTGGTTTCTTCTCTGTACCTGT
TTAAGCCAGGGGCATTAGCTAGAATTTTGCTTGAAGATCACTTTGTTGTGAGGTGTTAGG
CAGAGGAGAAGAGGGTCCCAGAGCTGCTGGGTTTGGGGAGCAGAAGGGCCAGGTGGCTCT
CCTGCCCTTCCTTATGCCCTTTTGGACTCTAGCTCTTTGCAGAGGCCTGGTTTCTGGCTT
GTACTGACTGCTCTGGGGGATCTTCAAACATCAACCAAATGGGCCATCGGTCACTTCATT
AGCTAAGGCAGGAGAAGGGGGAAAGACCAGTTGGTCCAGATGGAAAGTCAGCTCCCCTCC
CTTCAGCCGTATCCCTAGACAGGAAGGGATGCATGGGCTCCTGGCGTGGTGGTGGTGGGG
AGATGAGGCTGTAAGGAGACCAGAGTGGGAGGACAGCAGTCTTAGGTGACTTGGGTGACT
TGTCTCTGCTTCTTGCCAGGTGGGAGGGGCCTGTCCACACCTGCTCCCCGTACCGCAGTG
CCAGCCATGCGCTCCCCCTGGGCTGCCGTTGCCCCCTCCCTCGCCATCCGGTGAGGGAGT
CAGTGGATGGGAGGCCCATGGACTTTGGTTTTATAATGTAACCACTGTGGGAGGGGGGGA
GGGGGGTGTACCATGTATTTCAGTGAAATATTTAATATATTTAAGTATCAATAAAAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCATCTCCCAGCCTGGGGCAGGGATCCAGGCATCTGCTTGAGCCCCAGTGCACCTTGC
ACTTGAACTATCTGGGGTTTGGTGGGCAGAGGCTCAAGAGTTTCCTGAGTTCCCCAGCTG
GTGTCCTGTGACATGGTCTGCCTCAGGGCGGGGGTAGCATGGGGTCCCTCTGAGGACCCA
GATTCTGGTACTAGGGGGTGGGGAGGGGAACCTGGACCTCGGCCTTCCCCAGCCTTCGGC
CTGAGCCCGGCATGCTCCAGGCTCCCCGGTCCCCATGAAGCCTGCAGGGGCTGCAGGAGG
GTTAGGAGGGCTGGACCCTAGACTCCCTTCCTATCCCTGCCTGCCTTTTCCCCTCTTCCT
TGCAAGCTCCTTGCCTCTGGTCTGAATTAGTTGGTGCCTTGGTTTCTTCTCTGTACCTGT
TTAAGCCAGGGGCATTAGCTAGAATTTTGCTTGAAGATCACTTTGTTGTGAGGTGTTAGG
CAGAGGAGAAGAGGGTCCCAGAGCTGCTGGGTTTGGGGAGCAGAAGGGCCAGGTGGCTCT
CCTGCCCTTCCTTATGCCCTTTTGGACTCTAGCTCTTTGCAGAGGCCTGGTTTCTGGCTT
GTACTGACTGCTCTGGGGGATCTTCAAACATCAACCAAATGGGCCATCGGTCACTTCATT
AGCTAAGGCAGGAGAAGGGGGAAAGACCAGTTGGTCCAGATGGAAAGTCAGCTCCCCTCC
CTTCAGCCGTATCCCTAGACAGGAAGGGATGCATGGGCTCCTGGCGTGGTGGTGGTGGGG
AGATGAGGCTGTAAGGAGACCAGAGTGGGAGGACAGCAGTCTTAGGTGACTTGGGTGACT
TGTCTCTGCTTCTTGCCAGGTGGGAGGGGCCTGTCCACACCTGCTCCCCGTACCGCAGTG
CCAGCCATGCGCTCCCCCTGGGCTGCCGTTGCCCCCTCCCTCGCCATCCGGTGAGGGAGT
CAGTGGATGGGAGGCCCATGGACTTTGGTTTTATAATGTAACCACTGTGGGAGGGGGGGA
GGGGGGTGTACCATGTATTTCAGTGAAATATTTAATATATTTAAGTATCAATAAAAATCA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               15-128, - strand, RNAz p=0.949726
               

               
               477-592, - strand, RNAz p=0.995607
               

               
               907-1022, + strand, RNAz p=0.911721

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               15-128, - strand, RNAz p=0.949726
               

               
               477-592, - strand, RNAz p=0.995607
               

               
               907-1022, + strand, RNAz p=0.911721

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               501-601, + strand, RNAmicro p=0.999716

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               501-601, + strand, RNAmicro p=0.999716

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020983, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020983, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-1080, gnl|bosTau2|chr5 (26329106-26330157)
               

               
               15-1080, gnl|Hg17|chr12 (47447319-47446258)
               

               
               15-1080, gnl|Mm7|chr15 (98577315-98576311)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1080, gnl|bosTau2|chr5 (26329106-26330157)
               

               
               15-1080, gnl|Hg17|chr12 (47447319-47446258)
               

               
               15-1080, gnl|Mm7|chr15 (98577315-98576311)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hlv (0.278513)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	15-128, - strand, RNAz p=0.949726
	477-592, - strand, RNAz p=0.995607
	907-1022, + strand, RNAz p=0.911721

	15-1080, gnl\|bosTau2\|chr5 (26329106-26330157)
	15-1080, gnl\|Hg17\|chr12 (47447319-47446258)
	15-1080, gnl\|Mm7\|chr15 (98577315-98576311)

	hlv (0.278513)
	ese (0.126502)
	cly (0.120642)
	ecc (0.115035)
	eje (0.0988338)