Ss1.1-Mixn-0020p09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCGCTGGCTCCGCGCCCAGGCTCATCTCGGCCCGCCCAGGACCCGCAGCCTCCGTGCC CTTGAGCGTGCAGCGGGCGGATCGAGAGGCCCATACCCTCAGGGCGCACCGGCCTCCTCC GCACGGGAAGGAGCGGCAGCGCTTCAAGATGCGCTGCCTGAGCACGCCCATGCTGCTGCG GGCCCTGGCCCAGGCCCAGGCTGCACATGCAGGACATCCCAGCGCCCGGACCCTCCACAG CAGCGCGGTCGCAGCCACCTACAAGTTTGTGAACATGCGTGAGCCCTCGATGGACATGAA GTCGGTGACTGACCGGGCAGCCCAGACCCTGCTGTGGACCGAGCTTGTCCGAGGCCTGGG CATGACCCTGAGCTACTTGTTCCGGGAGCCGGCCACCATCAACTACCCATTTGAGAAGGG CCCGCTGAGCCCGCGCTTCCGCGGGGAGCACGCGCTGCGCCGGTACCCATCCGGGGAGGA GCGTTGCATCGCCTGCAAGCTTTGCGAGGCCGTCTGCCCTGCCCAGGCCATCACCATCGA GGCCGAGCCGAGGGCCGACGGCAGCCGCCGGACCACGCGCTATGACATCGACATGACCAA GTGCATCTACTGCGGCTTCTGCCAGGAGGCCTGCCCCGTGGACGCCATCGTCGAGGGCCC CAACTTCGAGTTCTCCACGGAGACGCACGAAGAGCTGCTGTACAACAAGGAGAAGCTTCT TAACAACGGGGACAAGTGGGAGGCCGAGATCGCCGCCAACATCCAGGCCGATTACCTCTA CCGGTGACTTGCCCGCCCGGCGGGCCCGCAGCCCCTCGTGCCCAATAAAAAAGCTCTGAC CTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCGCTGGCTCCGCGCCCAGGCTCATCTCGGCCCGCCCAGGACCCGCAGCCTCCGTGCC CTTGAGCGTGCAGCGGGCGGATCGAGAGGCCCATACCCTCAGGGCGCACCGGCCTCCTCC GCACGGGAAGGAGCGGCAGCGCTTCAAGATGCGCTGCCTGAGCACGCCCATGCTGCTGCG GGCCCTGGCCCAGGCCCAGGCTGCACATGCAGGACATCCCAGCGCCCGGACCCTCCACAG CAGCGCGGTCGCAGCCACCTACAAGTTTGTGAACATGCGTGAGCCCTCGATGGACATGAA GTCGGTGACTGACCGGGCAGCCCAGACCCTGCTGTGGACCGAGCTTGTCCGAGGCCTGGG CATGACCCTGAGCTACTTGTTCCGGGAGCCGGCCACCATCAACTACCCATTTGAGAAGGG CCCGCTGAGCCCGCGCTTCCGCGGGGAGCACGCGCTGCGCCGGTACCCATCCGGGGAGGA GCGTTGCATCGCCTGCAAGCTTTGCGAGGCCGTCTGCCCTGCCCAGGCCATCACCATCGA GGCCGAGCCGAGGGCCGACGGCAGCCGCCGGACCACGCGCTATGACATCGACATGACCAA GTGCATCTACTGCGGCTTCTGCCAGGAGGCCTGCCCCGTGGACGCCATCGTCGAGGGCCC CAACTTCGAGTTCTCCACGGAGACGCACGAAGAGCTGCTGTACAACAAGGAGAAGCTTCT TAACAACGGGGACAAGTGGGAGGCCGAGATCGCCGCCAACATCCAGGCCGATTACCTCTA CCGGTGACTTGCCCGCCCGGCGGGCCCGCAGCCCCTCGTGCCCAATAAAAAAGCTCTGAC CTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 97-228, gnl|bosTau2|chr17 (24985816-24985686) | |
| 349-527, gnl|bosTau2|chr29 (39503580-39503402) | |
| 349-527, gnl|canFam2|chr18 (52824734-52824511) | |
| 349-527, gnl|echTel1|scaffold_206206 (5832-6053) | |
| 349-527, gnl|fr1|chrUn (128314363-128314555) | |
| 349-527, gnl|galGal2|chr5 (34359-34572) | |
| 349-527, gnl|hg17|chr11 (67557149-67557371) | |
| 349-527, gnl|Hg17|chr11 (67557149-67557327) | |
| 349-527, gnl|loxAfr1|scaffold_107115 (1119-1342) | |
| 349-527, gnl|mm7|chr19 (3805883-3805685) | |
| 349-527, gnl|Mm7|chr19 (3805881-3805703) | |
| 349-527, gnl|monDom2|scaffold_226 (466903-466707) | |
| 349-527, gnl|panTro1|chr9 (68545666-68545888) | |
| 349-527, gnl|rheMac2|chr14 (6688354-6688132) | |
| 349-527, gnl|rn3|chr1 (206589194-206588996) | |
| 349-527, gnl|tetNig1|chr1 (7055329-7055525) | |
| 349-527, gnl|xenTro1|scaffold_365 (989102-989282) | |
| 654-840, gnl|bosTau2|chr29 (39501647-39501471) | |
| 654-840, gnl|canFam2|chr18 (52822743-52822608) | |
| 654-840, gnl|echTel1|scaffold_206206 (6958-7092) | |
| 654-840, gnl|fr1|chrUn (128314966-128315098) | |
| 654-840, gnl|galGal2|chrUn (116382066-116382202) | |
| 654-840, gnl|hg17|chr11 (67560503-67560639) | |
| 654-840, gnl|Hg17|chr11 (67560503-67560682) | |
| 654-840, gnl|mm7|chr19 (3803884-3803747) | |
| 654-840, gnl|Mm7|chr19 (3803882-3803680) | |
| 654-840, gnl|monDom2|scaffold_226 (466449-466302) | |
| 654-840, gnl|oryCun1|scaffold_151233 (432-583) | |
| 654-840, gnl|panTro1|chr9 (68549239-68549375) | |
| 654-840, gnl|rheMac2|chr14 (6684703-6684567) | |
| 654-840, gnl|rn3|chr1 (206587256-206587119) | |
| 654-840, gnl|tetNig1|chr1 (7055947-7056079) | |
| 654-840, gnl|xenTro1|scaffold_365 (1001624-1001760) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 97-228, gnl|bosTau2|chr17 (24985816-24985686) | |
| 349-527, gnl|bosTau2|chr29 (39503580-39503402) | |
| 349-527, gnl|canFam2|chr18 (52824734-52824511) | |
| 349-527, gnl|echTel1|scaffold_206206 (5832-6053) | |
| 349-527, gnl|fr1|chrUn (128314363-128314555) | |
| 349-527, gnl|galGal2|chr5 (34359-34572) | |
| 349-527, gnl|hg17|chr11 (67557149-67557371) | |
| 349-527, gnl|Hg17|chr11 (67557149-67557327) | |
| 349-527, gnl|loxAfr1|scaffold_107115 (1119-1342) | |
| 349-527, gnl|mm7|chr19 (3805883-3805685) | |
| 349-527, gnl|Mm7|chr19 (3805881-3805703) | |
| 349-527, gnl|monDom2|scaffold_226 (466903-466707) | |
| 349-527, gnl|panTro1|chr9 (68545666-68545888) | |
| 349-527, gnl|rheMac2|chr14 (6688354-6688132) | |
| 349-527, gnl|rn3|chr1 (206589194-206588996) | |
| 349-527, gnl|tetNig1|chr1 (7055329-7055525) | |
| 349-527, gnl|xenTro1|scaffold_365 (989102-989282) | |
| 654-840, gnl|bosTau2|chr29 (39501647-39501471) | |
| 654-840, gnl|canFam2|chr18 (52822743-52822608) | |
| 654-840, gnl|echTel1|scaffold_206206 (6958-7092) | |
| 654-840, gnl|fr1|chrUn (128314966-128315098) | |
| 654-840, gnl|galGal2|chrUn (116382066-116382202) | |
| 654-840, gnl|hg17|chr11 (67560503-67560639) | |
| 654-840, gnl|Hg17|chr11 (67560503-67560682) | |
| 654-840, gnl|mm7|chr19 (3803884-3803747) | |
| 654-840, gnl|Mm7|chr19 (3803882-3803680) | |
| 654-840, gnl|monDom2|scaffold_226 (466449-466302) | |
| 654-840, gnl|oryCun1|scaffold_151233 (432-583) | |
| 654-840, gnl|panTro1|chr9 (68549239-68549375) | |
| 654-840, gnl|rheMac2|chr14 (6684703-6684567) | |
| 654-840, gnl|rn3|chr1 (206587256-206587119) | |
| 654-840, gnl|tetNig1|chr1 (7055947-7056079) | |
| 654-840, gnl|xenTro1|scaffold_365 (1001624-1001760) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| hlv (1.39256) | |
| cov (1.18937) | |
| nms (0.855432) | |
| mas (0.630915) | |
| cag (0.604778) | |
| ese (0.506009) | |
| ecc (0.46014) | |
| hyp (0.42851) | |
| pty (0.428143) | |
| amn (0.417711) | |
| nlu (0.383362) | |
| nep (0.36785) | |
| ill (0.351185) | |
| jca (0.34188) | |
| mcp (0.341297) | |
| nco (0.323468) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| col (0.195008) | |
| ldo (0.194005) | |
| fty (0.17584) | |
| ton (0.1755) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (1.39256) | |
| cov (1.18937) | |
| nms (0.855432) | |
| mas (0.630915) | |
| cag (0.604778) | |
| ese (0.506009) | |
| ecc (0.46014) | |
| hyp (0.42851) | |
| pty (0.428143) | |
| amn (0.417711) | |
| nlu (0.383362) | |
| nep (0.36785) | |
| ill (0.351185) | |
| jca (0.34188) | |
| mcp (0.341297) | |
| nco (0.323468) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| col (0.195008) | |
| ldo (0.194005) | |
| fty (0.17584) | |
| ton (0.1755) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) |