Non-Coding RNA Search

Ss1.1-Mixn-0020p12.5

Sequence:


               
               TGCGCGGCCGGACGCCGGCGCCATGGAGGAGTACGCTCGGGAGCCTTGCCCATGGCGAAT
TGTGGATGATTGCGGTGGAGCCTTCACTATGGGTGTTATCGGCGGTGGAGTCTTCCAGGC
CATTAAGGGCTTCCGCAATGCCCCTGTCGGAATCCGGCACCGATTGAGAGGCAGCGTCAA
CGCTGTGAGGATCCGAGCCCCTCAGATTGGAGGTAGCTTCGCGGTGTGGGGAGGCCTGTT
CTCCACCATCGACTGCGGTCTGGTGCGCCTGCGGGGCAAGGAGGATCCCTGGAACTCCAT
CACCAGTGGAGCATTGACCGGTGCTGTGCTGGCCGCCCGCAGTGGCCCACTGGCCATGGT
GGGCTCGGCAATGATGGGGGGCATCCTTTTGGCCCTTATTGAGGGTGTTGGCATCCTCCT
CACTCGTTACACCGCCCAGCAGTTCCGCAATGCACCCCCATTCCTGGAGGACCCCAGCCA
GCTGCCCCCTAAGGAGGGTACCCCGGCCCCAGGCTACCCCAGCTATCAGCAGTACCACTG
AGGAAGTGACCGCCTATCACCGCCACCGTGGGAGCTCCTCCTCGGTTCCCTCCCCGATGA
TCTACCTCCAAGGGAGGGCTGGCTCCCAGTTGGCCTGGGACCCTCGAGAGAGGGCCTCTA
CTCTGTTCCCTTATCCCAGGTTGGGGTTGGGGCACCCCAGCTGCCCTGATGGATGGGTTT
CTTCTCTCTCAGGGCACCCCAGCCCACACTCACATGTAACAAGCTCTCACCCTAGTCCTT
TCGCGTGGCGCCCCGATGAGTATTTAAAGCCAGTTTTGAAATGCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGCGGCCGGACGCCGGCGCCATGGAGGAGTACGCTCGGGAGCCTTGCCCATGGCGAAT
TGTGGATGATTGCGGTGGAGCCTTCACTATGGGTGTTATCGGCGGTGGAGTCTTCCAGGC
CATTAAGGGCTTCCGCAATGCCCCTGTCGGAATCCGGCACCGATTGAGAGGCAGCGTCAA
CGCTGTGAGGATCCGAGCCCCTCAGATTGGAGGTAGCTTCGCGGTGTGGGGAGGCCTGTT
CTCCACCATCGACTGCGGTCTGGTGCGCCTGCGGGGCAAGGAGGATCCCTGGAACTCCAT
CACCAGTGGAGCATTGACCGGTGCTGTGCTGGCCGCCCGCAGTGGCCCACTGGCCATGGT
GGGCTCGGCAATGATGGGGGGCATCCTTTTGGCCCTTATTGAGGGTGTTGGCATCCTCCT
CACTCGTTACACCGCCCAGCAGTTCCGCAATGCACCCCCATTCCTGGAGGACCCCAGCCA
GCTGCCCCCTAAGGAGGGTACCCCGGCCCCAGGCTACCCCAGCTATCAGCAGTACCACTG
AGGAAGTGACCGCCTATCACCGCCACCGTGGGAGCTCCTCCTCGGTTCCCTCCCCGATGA
TCTACCTCCAAGGGAGGGCTGGCTCCCAGTTGGCCTGGGACCCTCGAGAGAGGGCCTCTA
CTCTGTTCCCTTATCCCAGGTTGGGGTTGGGGCACCCCAGCTGCCCTGATGGATGGGTTT
CTTCTCTCTCAGGGCACCCCAGCCCACACTCACATGTAACAAGCTCTCACCCTAGTCCTT
TCGCGTGGCGCCCCGATGAGTATTTAAAGCCAGTTTTGAAATGCCAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57111755|ref|XP_538028.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57111755|ref|XP_538028.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               452-777, - strand, RNAz p=0.999925

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               452-777, - strand, RNAz p=0.999925

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               20-825, gnl|bosTau2|chr23 (23443706-23444521)
               

               
               20-825, gnl|Hg17|chrX (48510390-48506980)
               

               
               20-825, gnl|Mm7|chr16 (32001223-32000420)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-825, gnl|bosTau2|chr23 (23443706-23444521)
               

               
               20-825, gnl|Hg17|chrX (48510390-48506980)
               

               
               20-825, gnl|Mm7|chr16 (32001223-32000420)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               ton (0.351)
               

               
               pla (0.267344)
               

               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.351)
               

               
               pla (0.267344)
               

               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)

	20-825, gnl\|bosTau2\|chr23 (23443706-23444521)
	20-825, gnl\|Hg17\|chrX (48510390-48506980)
	20-825, gnl\|Mm7\|chr16 (32001223-32000420)

	ton (0.351)
	pla (0.267344)
	jej (0.197844)
	fbs (0.175346)
	nco (0.161734)
	cag (0.151194)
	hyp (0.142837)
	nmm (0.132802)
	ese (0.126502)
	cly (0.120642)