Non-Coding RNA Search

Ss1.1-Mixn-0020p16.5

Sequence:


               
               GGATTCCTGAATACTGCTGCTTGCCAGGGCTTTCCACTCCTGGGGCATCCTTGAGGCTTG
CCCGAAGACTGGAGTTAGGAGAACACAGCAGACTCTGATGCTAGAGGCCCTGCCCCTGCT
GCTGGCAGTCTGCTCCTTGGTCCTGGTGCTGCTGACACTGTTGTGGCTGCTGCCACACCC
GAAGTGCTCTCTCATCTTCATTGCCTGGGAAGAGTTTATCCTGCTTCCCGTCAGGAACCT
CCTCATGGGCAGCAGCAAGGAACAGCGCATTCTGCAATATGTGCTGCAGCACGCAGTGGC
GGGGGACCCAGAGAGCGTGCTGGACACCATCGACACCTACTCCTCTCAGAAGGAGTGGGC
CATGCACGTGGGCAGAAAGAAAGGCCAGATCGTGGACACTGTGGTGCAGGAGCAGCGTCC
TTCTGTGCTGCTGGAGCTGGGGGCTTACTGTGGCTACTCGGCTGTGCGCATGGCCCGCCT
GCTGCTGCCCAGCGCCCGGCTGCTGACCATCGAGCTTAACCCTGACAATGCTGCCATCGC
CCAGCAGGTGGTGGACTTCGCAGGCCTGCAGGACAGGGTGACCGTTGTCGTCGGGGCATC
CCAGGACATCATCCCTCAGCTGAAGAAGAAATATGATGTGGATACGCTGGACATGGTCTT
TCTTGACCACTGGAAGGACCGGTACCTGCCAGACACGCTCCTGCTAGAGGAATGTGGCCT
GCTGCGGAAGGGAACGGTGTTGCTGGCCGACAACGTCATCTGCCCGGGGGCCCCAGATTT
CCTGGCACACGTGCGAGGGTGCGGCCGCTTCGAGTGTACACACTTTAGCTCATACCTGGA
GTACTCGCAGATGGTGGATGGCCTGGAGAAGGCTGTCTACAAGGGCCCAGGCAGCCCTGC
ACAGCCTTGACGGCCTGCCCTGTGCCAGCTCCCTCTCCAACCCTGGTTCTGGAGGGTGCA
GTGAACCCACTTCTGCCAACTTCGCTTCTGCTAGTATCTATCTGTCTGTCTTCCATGCAG
CCCCCTTGAGGCCAGTGAGGCCCAGGCCTGCCCACACGGGTCCGCCCCAAGTGCAACCAG
CTCACCTTGCAAAATCACCCCAATAAATCTGGAAAGTATCTGCCTATAAAACCAGGTCAG
TCAGGCAGTGCCTGTGACGGTGTCACTCACCCCCACCAGCATGCCAACAGGGCAAACCCA
GCAGATGCTGGAAGCGGGGACCTGTTGGGCTGTGCAGGCATGCAGCCTGCCTTTGAGGTC
TGTCATCACCAGGTGGCAGCAGTGCCTCAGGAGTGGCACCCTACACCTCTATTCCAGAGC
TTTCGCCTCTTTTTTAAGTCAGAAATGCAACTTCTTTACTAAAAGCAGCTGTTAATAATC
TTACATACAATATCATGTTTAAAAGATATACTGCAATAGAAATGAAAGATTTGAGTATTT
AGCTAAAAGATGAATGGAGTGCTTCTCTTCAGCCACCACACTGCTCCTTTTGTCCCCTGG
TGTCCTCATCTTTGCATCAAACATGCTGCCCCCACCCCCACCCCAGACGCTAAGGCTGTA
GACTGGCCACAGCAGTGCCAGGGGTCAGCCCTGCTCAGTGCTGCTTCTGTGGCCAGGCCG
CGGTACCTGCTATAGCCCCATGGGGATGTCACCAGGCAGGGCTGAGCCTAACCGGGGCCA
CCCCACCTGGGAGACCAGAACAGGGTAGCCATCCATGCTTCAGGCCCATGCTGGGGAAGG
TGGACATGGCCGGCCCTACAGCAGCGCCAGCTGCAATCTGGCCAGCACCCAGCCTCCCAG
GGCAGAGTGGAAACACCGGCCCCACTCCCACTCTGCCCCACTAAGACCAGCTGGGGCACT
TCTGTGGTTGCCCAGCTGGCAAATGAAGGAGTGAAGTTGGCCTGTATCTACCTAAATCCA
GTGCCACCAGCCCTGACCCTGCTGTTCTAGCCTCAAGACCCCTAAAGGGTTTGATCTCTG
GCCACCTCAGGCTCCCCAGGGTCCCAACAGAGGTTGGGGTCCTAGATCCCAGGGTCACCC
TCCTGATTGGGTCCACCTGTGCCCAAGACCAGCCACCAGGCAGGACACTATCCCGGGCCT
CAGGGCCCTGCTAACCACCCAGGATCAAGCCTACTGCTCTTTGTGTATAGAATGAGAATG
CCTGTGGGGAAACAGCCATGGGGCCTAGGAGGTGAGCTCCCACTGGACACAGCAGACATC
ACAGAGGTGGGGGCCACCTCCGCCCACCCAGCAAATGAGGGGGCAGTGGTGGAGAGGGAG
TTGAGCCTCAGAAGACAGAAAGTTCCTTTACTGCTTTTTTTAATTTTCAAGTTTTCTTAC
AAAAATTTAGATGTTTACCAATACAGTCTTTAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTCCTGAATACTGCTGCTTGCCAGGGCTTTCCACTCCTGGGGCATCCTTGAGGCTTG
CCCGAAGACTGGAGTTAGGAGAACACAGCAGACTCTGATGCTAGAGGCCCTGCCCCTGCT
GCTGGCAGTCTGCTCCTTGGTCCTGGTGCTGCTGACACTGTTGTGGCTGCTGCCACACCC
GAAGTGCTCTCTCATCTTCATTGCCTGGGAAGAGTTTATCCTGCTTCCCGTCAGGAACCT
CCTCATGGGCAGCAGCAAGGAACAGCGCATTCTGCAATATGTGCTGCAGCACGCAGTGGC
GGGGGACCCAGAGAGCGTGCTGGACACCATCGACACCTACTCCTCTCAGAAGGAGTGGGC
CATGCACGTGGGCAGAAAGAAAGGCCAGATCGTGGACACTGTGGTGCAGGAGCAGCGTCC
TTCTGTGCTGCTGGAGCTGGGGGCTTACTGTGGCTACTCGGCTGTGCGCATGGCCCGCCT
GCTGCTGCCCAGCGCCCGGCTGCTGACCATCGAGCTTAACCCTGACAATGCTGCCATCGC
CCAGCAGGTGGTGGACTTCGCAGGCCTGCAGGACAGGGTGACCGTTGTCGTCGGGGCATC
CCAGGACATCATCCCTCAGCTGAAGAAGAAATATGATGTGGATACGCTGGACATGGTCTT
TCTTGACCACTGGAAGGACCGGTACCTGCCAGACACGCTCCTGCTAGAGGAATGTGGCCT
GCTGCGGAAGGGAACGGTGTTGCTGGCCGACAACGTCATCTGCCCGGGGGCCCCAGATTT
CCTGGCACACGTGCGAGGGTGCGGCCGCTTCGAGTGTACACACTTTAGCTCATACCTGGA
GTACTCGCAGATGGTGGATGGCCTGGAGAAGGCTGTCTACAAGGGCCCAGGCAGCCCTGC
ACAGCCTTGACGGCCTGCCCTGTGCCAGCTCCCTCTCCAACCCTGGTTCTGGAGGGTGCA
GTGAACCCACTTCTGCCAACTTCGCTTCTGCTAGTATCTATCTGTCTGTCTTCCATGCAG
CCCCCTTGAGGCCAGTGAGGCCCAGGCCTGCCCACACGGGTCCGCCCCAAGTGCAACCAG
CTCACCTTGCAAAATCACCCCAATAAATCTGGAAAGTATCTGCCTATAAAACCAGGTCAG
TCAGGCAGTGCCTGTGACGGTGTCACTCACCCCCACCAGCATGCCAACAGGGCAAACCCA
GCAGATGCTGGAAGCGGGGACCTGTTGGGCTGTGCAGGCATGCAGCCTGCCTTTGAGGTC
TGTCATCACCAGGTGGCAGCAGTGCCTCAGGAGTGGCACCCTACACCTCTATTCCAGAGC
TTTCGCCTCTTTTTTAAGTCAGAAATGCAACTTCTTTACTAAAAGCAGCTGTTAATAATC
TTACATACAATATCATGTTTAAAAGATATACTGCAATAGAAATGAAAGATTTGAGTATTT
AGCTAAAAGATGAATGGAGTGCTTCTCTTCAGCCACCACACTGCTCCTTTTGTCCCCTGG
TGTCCTCATCTTTGCATCAAACATGCTGCCCCCACCCCCACCCCAGACGCTAAGGCTGTA
GACTGGCCACAGCAGTGCCAGGGGTCAGCCCTGCTCAGTGCTGCTTCTGTGGCCAGGCCG
CGGTACCTGCTATAGCCCCATGGGGATGTCACCAGGCAGGGCTGAGCCTAACCGGGGCCA
CCCCACCTGGGAGACCAGAACAGGGTAGCCATCCATGCTTCAGGCCCATGCTGGGGAAGG
TGGACATGGCCGGCCCTACAGCAGCGCCAGCTGCAATCTGGCCAGCACCCAGCCTCCCAG
GGCAGAGTGGAAACACCGGCCCCACTCCCACTCTGCCCCACTAAGACCAGCTGGGGCACT
TCTGTGGTTGCCCAGCTGGCAAATGAAGGAGTGAAGTTGGCCTGTATCTACCTAAATCCA
GTGCCACCAGCCCTGACCCTGCTGTTCTAGCCTCAAGACCCCTAAAGGGTTTGATCTCTG
GCCACCTCAGGCTCCCCAGGGTCCCAACAGAGGTTGGGGTCCTAGATCCCAGGGTCACCC
TCCTGATTGGGTCCACCTGTGCCCAAGACCAGCCACCAGGCAGGACACTATCCCGGGCCT
CAGGGCCCTGCTAACCACCCAGGATCAAGCCTACTGCTCTTTGTGTATAGAATGAGAATG
CCTGTGGGGAAACAGCCATGGGGCCTAGGAGGTGAGCTCCCACTGGACACAGCAGACATC
ACAGAGGTGGGGGCCACCTCCGCCCACCCAGCAAATGAGGGGGCAGTGGTGGAGAGGGAG
TTGAGCCTCAGAAGACAGAAAGTTCCTTTACTGCTTTTTTTAATTTTCAAGTTTTCTTAC
AAAAATTTAGATGTTTACCAATACAGTCTTTAATGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|544074|sp|Q99028|COMT_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|544074|sp|Q99028|COMT_PIG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               788-907, + strand, RNAz p=0.938321

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               788-907, + strand, RNAz p=0.938321

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               97-384, gnl|bosTau2|chr17 (45791653-45791360)
               

               
               97-384, gnl|Hg17|chr22 (18324603-18324893)
               

               
               97-384, gnl|Mm7|chr16 (17961691-17961422)
               


               
               708-1157, gnl|bosTau2|chr17 (44353101-44352656)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               97-384, gnl|bosTau2|chr17 (45791653-45791360)
               

               
               97-384, gnl|Hg17|chr22 (18324603-18324893)
               

               
               97-384, gnl|Mm7|chr16 (17961691-17961422)
               


               
               708-1157, gnl|bosTau2|chr17 (44353101-44352656)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               cov (1.18937)
               

               
               cli (0.91687)
               

               
               hyp (0.714184)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               ton (0.351)
               

               
               jej (0.296765)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (1.18937)
               

               
               cli (0.91687)
               

               
               hyp (0.714184)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               ton (0.351)
               

               
               jej (0.296765)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	97-384, gnl\|bosTau2\|chr17 (45791653-45791360)
	97-384, gnl\|Hg17\|chr22 (18324603-18324893)
	97-384, gnl\|Mm7\|chr16 (17961691-17961422)

	708-1157, gnl\|bosTau2\|chr17 (44353101-44352656)

	cov (1.18937)
	cli (0.91687)
	hyp (0.714184)
	hlv (0.417769)
	amn (0.417711)
	ton (0.351)
	jej (0.296765)
	ece (0.229305)
	mas (0.210305)
	cty (0.20816)
	fli (0.202881)
	fcc (0.197785)
	nep (0.183925)
	ill (0.175593)
	rec (0.17307)
	duo (0.172801)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	cag (0.151194)
	lnt (0.142308)
	pla (0.133672)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	cbl (0.114797)
	nbm (0.0993246)
	eje (0.0988338)