Non-Coding RNA Search

Ss1.1-Mixn-0020p19.5

Sequence:


               
               GAAGTGGCTTGGGTTGCCACTGTGGCTCGGGTTTAGTCCTTGGCCAGGGAATTTCCACAT
GCCCCACTGCCCCCCCACACACACCCGAAAGAGTATCACTATCTAAAGTTAGAATGCTGT
CTTCTCCAAACTAGGGGCAGGATAGTGTCTGAAAGAAGCTTCCTCTCAGAACCAAGAGGC
TCTGCTGAGCATTTCTTTTTAGATTTTCGTGTGCCTCTGGATCTTTGCTGCTTGAAGCAG
ATGGTTTTTTACTGTCCACCTGCTCTTTCCTATTTGATGAATAGATTTCCTTTTCCTCTT
TGGTACGGCTAAGTTTCAACTCCTGTGTCTTCCTGTTCTCCCTCCCTCTGGGTAACACAG
AATCATGCCGCTTTTGCCCAGCTGGCATTGATCTGATAGTAGTGAGATGCCTTGTCCTAA
TGATCTTTACTGGGTTTCCGCAGAAGAATCATAATTAAGATAATTAATAGAATTGTTGCT
TGGAAAGAGGTGGGATACAATGTTTTAAGAAGAAAGAACAGCTTATATTGGTTCTCCATG
TGGACACACTAAACAGTGGTTTTAAGTTTCCCGTGTTTACCACATGCTAAAGGTAAGGTG
GGAACGAGAAAGCTCTCGTCTGTATGGATATTTTAAACTCTGTTAGGTAGTAGCCTTTGG
AAAAGTCCCCTGTTTGGTCCTGCTTTCTGACCTATTTGCCTTTTCAGGGTAATCTTGTGG
CACAAGTGATAGCATTTAAAAGCTTTAGCCTTTAATTCCTCCTTCCTGCTGCCAGCCCTG
AGCTGTCTCTATGCACTTCTGACACGTCTACTGTTTGGTCTCTGTGTTCTTTGTTACTTG
GGTGCAATAGCAACTTCTCTGTGCATTCCATCTTTCTTTCAAGTTGTGTAAAGTTCTTCA
CTTTTTTCTCTGAGGGGGTAGGGGGTGGGGGGAGGAGTCAGCATGATTCTATTTTAATGT
AGAAAATGTGACCTGGATATCAAATGAAAATAAATATTAAATTAAATGGAAATTAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGTGGCTTGGGTTGCCACTGTGGCTCGGGTTTAGTCCTTGGCCAGGGAATTTCCACAT
GCCCCACTGCCCCCCCACACACACCCGAAAGAGTATCACTATCTAAAGTTAGAATGCTGT
CTTCTCCAAACTAGGGGCAGGATAGTGTCTGAAAGAAGCTTCCTCTCAGAACCAAGAGGC
TCTGCTGAGCATTTCTTTTTAGATTTTCGTGTGCCTCTGGATCTTTGCTGCTTGAAGCAG
ATGGTTTTTTACTGTCCACCTGCTCTTTCCTATTTGATGAATAGATTTCCTTTTCCTCTT
TGGTACGGCTAAGTTTCAACTCCTGTGTCTTCCTGTTCTCCCTCCCTCTGGGTAACACAG
AATCATGCCGCTTTTGCCCAGCTGGCATTGATCTGATAGTAGTGAGATGCCTTGTCCTAA
TGATCTTTACTGGGTTTCCGCAGAAGAATCATAATTAAGATAATTAATAGAATTGTTGCT
TGGAAAGAGGTGGGATACAATGTTTTAAGAAGAAAGAACAGCTTATATTGGTTCTCCATG
TGGACACACTAAACAGTGGTTTTAAGTTTCCCGTGTTTACCACATGCTAAAGGTAAGGTG
GGAACGAGAAAGCTCTCGTCTGTATGGATATTTTAAACTCTGTTAGGTAGTAGCCTTTGG
AAAAGTCCCCTGTTTGGTCCTGCTTTCTGACCTATTTGCCTTTTCAGGGTAATCTTGTGG
CACAAGTGATAGCATTTAAAAGCTTTAGCCTTTAATTCCTCCTTCCTGCTGCCAGCCCTG
AGCTGTCTCTATGCACTTCTGACACGTCTACTGTTTGGTCTCTGTGTTCTTTGTTACTTG
GGTGCAATAGCAACTTCTCTGTGCATTCCATCTTTCTTTCAAGTTGTGTAAAGTTCTTCA
CTTTTTTCTCTGAGGGGGTAGGGGGTGGGGGGAGGAGTCAGCATGATTCTATTTTAATGT
AGAAAATGTGACCTGGATATCAAATGAAAATAAATATTAAATTAAATGGAAATTAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-191, + strand, RNAz p=0.866276

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-191, + strand, RNAz p=0.866276

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC003100, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC003100, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               80-636, gnl|bosTau2|chr8 (36102898-36102338)
               

               
               80-636, gnl|Hg17|chr8 (20122525-20123085)
               

               
               80-636, gnl|Mm7|chr8 (67567653-67568139)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-636, gnl|bosTau2|chr8 (36102898-36102338)
               

               
               80-636, gnl|Hg17|chr8 (20122525-20123085)
               

               
               80-636, gnl|Mm7|chr8 (67567653-67568139)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	80-636, gnl\|bosTau2\|chr8 (36102898-36102338)
	80-636, gnl\|Hg17\|chr8 (20122525-20123085)
	80-636, gnl\|Mm7\|chr8 (67567653-67568139)

	ski (0.29347)
	hyp (0.285673)
	csk (0.281492)
	ecc (0.23007)
	fcc (0.197785)
	fhi (0.169578)
	spl (0.143184)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	pla (0.133672)
	nmm (0.132802)
	ret (0.128733)
	eru (0.120048)
	ebs (0.118301)
	ldo (0.0970026)