Non-Coding RNA Search

Ss1.1-Mixn-0021b07.5

Sequence:


               
               TAAAACACGTTCTTTTACCTAACAGAAAATAAGTATGTTTGCTATATATTGTTAATATGC
TTGTAGTGCTAAGGAGTGGACTTGAGGTCCCAGGAGAGTTCACTTTTATTTTTGCTGGCC
AGATAGAGTAAAGGCTCTGAGCACGAGCAGCATGTAACGTCCTAACCAGGTATAGGTCAC
GTTCAAGCAAAGTGAAATGAAATCCTTTGATGCTGTAGCCAAGGGGGAAAAAATTGGAGT
TAAATGTTGATTTACTTATAACTAGACGTCTATGTGAAAAAAATATAATATATATATATA
TATACACACATATATATATGATACACAGAAGTCACTTTTATTTATCAGGCTTTATTCTAC
TCATGAAGCCACAGTTAAACTGTTCTGCAGCAGCTGGTTTTTGATGCTGATGGACACGTC
CAGGATGTGTTATTTTTTTCCCACTACCACTGTAATGACACATGTAATCACTTTTGTACA
TGCAGCTTCTTGGCTTCATAGCTATGAAGCTATTGAAACATGTTCACTATCCTTAGTCTT
TAATGCTGCTTTGGTTAAAAGTGATCTTTTTCTCTTCTGACATCTTCATTAGCTCATCAT
AATGCTGTCCATTTGAGGCCTCAGGCCCATAGCAAGATACGCTAAGCAGCATTCCATGAC
TCCAAAGTATTTTACAGAAACACTTTAAAAAAAAATAGAGAAACCCTTTGTATATGAGGT
GGTTCACAAACTAGAGGTTGTAGTTACTTTTTTTCCTAAAAAGAATCAGGTGTCTAACCT
GTCCTTCCCGTACCAAAATGAAAAGGGCCATGTGTACCCTTTAAAGAAAAGACCTGATTT
GCTCTTTATTTGCACTATTTTTGTACTTTACTCATCTTAAACCATCAGGAAAAAAAAAAA
TCACACCCATGATTTAGTAATTTGGAGGCATAGGTTAACTGAAGTGAAGGATGTGCCACA
CTTGCCCTTCAGATGCCTTCTTCTTGACCAATTTGCAGTTAAGATCGTGTCATCTGAGTG
GTTACTCCCTATTTTGATAAGATGTATATAGACCCAAGAAGTGAATCACAGTACGTGTCA
GTCCTTTCTCAATAAATATAATACCAGAGTGTTTATAACTTGTATTGACTTCTTTTATGG
TAGAGCTGTTAATAGGGAAAAAAAATACATTGAATCAAATAGAATTATCTGTATGTGAAC
ATAGAGCACTTACCTAGAGCTGGGTGGCCTGGGTCATCATTGTCTAGCCAATCCTGTGTC
CCTGTGCTGTGTGACTTTGGACAAGGCATGTCATCCCTCTGGGCCTCCCATTTCACCATC
TGTAAAACAAGGGGCTTAAAGTAGATAATGGCTGAGATCCTTCTGTTCCGTCCAACGGCC
TACCCCCCCCTCTACTGGTCCTGCCAACATGTTGGTGCTATAAGCTGCTTCAAGTAGAAA
ATTGGTTTGTCTATTGTGTTGTGCTCATTTAATAGCTTAGGAAAGGCATTTTTGTTATAT
GGCTTGTTTTCTAGTTTTATGGACTTGATTACTGTAATAATGTCTTGTTTGTAGCCATGT
AACTATAAACATGTAGTCTCTTGATGTCTCAGTAAATTTGCATTTGATATAATAGTTGAT
GGGATTGTTGTTTTATAACATTCTTTGGCTCCTCATCTGTCCAGCCTCTTATTAACCTAA
ACATTGTGATCATTGTTTGGAAATCTGTTCTGTGGAAAGAATAAAAGCATTTACTTCACG
GCTAATGTGTTCACAGATTTGAAAGACGTTTCATTAAAGCACCATTGCTCCCTTTAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAACACGTTCTTTTACCTAACAGAAAATAAGTATGTTTGCTATATATTGTTAATATGC
TTGTAGTGCTAAGGAGTGGACTTGAGGTCCCAGGAGAGTTCACTTTTATTTTTGCTGGCC
AGATAGAGTAAAGGCTCTGAGCACGAGCAGCATGTAACGTCCTAACCAGGTATAGGTCAC
GTTCAAGCAAAGTGAAATGAAATCCTTTGATGCTGTAGCCAAGGGGGAAAAAATTGGAGT
TAAATGTTGATTTACTTATAACTAGACGTCTATGTGAAAAAAATATAATATATATATATA
TATACACACATATATATATGATACACAGAAGTCACTTTTATTTATCAGGCTTTATTCTAC
TCATGAAGCCACAGTTAAACTGTTCTGCAGCAGCTGGTTTTTGATGCTGATGGACACGTC
CAGGATGTGTTATTTTTTTCCCACTACCACTGTAATGACACATGTAATCACTTTTGTACA
TGCAGCTTCTTGGCTTCATAGCTATGAAGCTATTGAAACATGTTCACTATCCTTAGTCTT
TAATGCTGCTTTGGTTAAAAGTGATCTTTTTCTCTTCTGACATCTTCATTAGCTCATCAT
AATGCTGTCCATTTGAGGCCTCAGGCCCATAGCAAGATACGCTAAGCAGCATTCCATGAC
TCCAAAGTATTTTACAGAAACACTTTAAAAAAAAATAGAGAAACCCTTTGTATATGAGGT
GGTTCACAAACTAGAGGTTGTAGTTACTTTTTTTCCTAAAAAGAATCAGGTGTCTAACCT
GTCCTTCCCGTACCAAAATGAAAAGGGCCATGTGTACCCTTTAAAGAAAAGACCTGATTT
GCTCTTTATTTGCACTATTTTTGTACTTTACTCATCTTAAACCATCAGGAAAAAAAAAAA
TCACACCCATGATTTAGTAATTTGGAGGCATAGGTTAACTGAAGTGAAGGATGTGCCACA
CTTGCCCTTCAGATGCCTTCTTCTTGACCAATTTGCAGTTAAGATCGTGTCATCTGAGTG
GTTACTCCCTATTTTGATAAGATGTATATAGACCCAAGAAGTGAATCACAGTACGTGTCA
GTCCTTTCTCAATAAATATAATACCAGAGTGTTTATAACTTGTATTGACTTCTTTTATGG
TAGAGCTGTTAATAGGGAAAAAAAATACATTGAATCAAATAGAATTATCTGTATGTGAAC
ATAGAGCACTTACCTAGAGCTGGGTGGCCTGGGTCATCATTGTCTAGCCAATCCTGTGTC
CCTGTGCTGTGTGACTTTGGACAAGGCATGTCATCCCTCTGGGCCTCCCATTTCACCATC
TGTAAAACAAGGGGCTTAAAGTAGATAATGGCTGAGATCCTTCTGTTCCGTCCAACGGCC
TACCCCCCCCTCTACTGGTCCTGCCAACATGTTGGTGCTATAAGCTGCTTCAAGTAGAAA
ATTGGTTTGTCTATTGTGTTGTGCTCATTTAATAGCTTAGGAAAGGCATTTTTGTTATAT
GGCTTGTTTTCTAGTTTTATGGACTTGATTACTGTAATAATGTCTTGTTTGTAGCCATGT
AACTATAAACATGTAGTCTCTTGATGTCTCAGTAAATTTGCATTTGATATAATAGTTGAT
GGGATTGTTGTTTTATAACATTCTTTGGCTCCTCATCTGTCCAGCCTCTTATTAACCTAA
ACATTGTGATCATTGTTTGGAAATCTGTTCTGTGGAAAGAATAAAAGCATTTACTTCACG
GCTAATGTGTTCACAGATTTGAAAGACGTTTCATTAAAGCACCATTGCTCCCTTTAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1796, gnl|bosTau2|chr3 (53086353-53088082)
               

               
               1-1796, gnl|Hg17|chr1 (67881034-67879242)
               

               
               1-1796, gnl|Mm7|chr6 (67001333-67003075)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1796, gnl|bosTau2|chr3 (53086353-53088082)
               

               
               1-1796, gnl|Hg17|chr1 (67881034-67879242)
               

               
               1-1796, gnl|Mm7|chr6 (67001333-67003075)

Expressed library(ies): 41 entry(ies)

More info

Expressed library(ies): 41 entry(ies)

Help | Less info


               
               fbs (1.22742)
               

               
               gul (1.06553)
               

               
               lin (0.728014)
               

               
               liv (0.438853)
               

               
               cty (0.41632)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               hlv (0.278513)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 41 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (1.22742)
               

               
               gul (1.06553)
               

               
               lin (0.728014)
               

               
               liv (0.438853)
               

               
               cty (0.41632)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               hlv (0.278513)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-1796, gnl\|bosTau2\|chr3 (53086353-53088082)
	1-1796, gnl\|Hg17\|chr1 (67881034-67879242)
	1-1796, gnl\|Mm7\|chr6 (67001333-67003075)

	fbs (1.22742)
	gul (1.06553)
	lin (0.728014)
	liv (0.438853)
	cty (0.41632)
	col (0.390016)
	nlu (0.383362)
	sin (0.349895)
	rec (0.346141)
	cut (0.339847)
	vin (0.332557)
	sme (0.305437)
	fat (0.294855)
	ski (0.29347)
	spl (0.286369)
	hyp (0.285673)
	hlv (0.278513)
	nca (0.273748)
	ute (0.265569)
	ova (0.258264)
	tra (0.246184)
	mgp (0.230681)
	tes (0.207814)
	fli (0.202881)
	jej (0.197844)
	cmu (0.186393)
	mgm (0.180343)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	csp (0.161186)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	lnt (0.142308)
	kid (0.129735)
	ret (0.128733)
	bla (0.124347)
	pgl (0.118483)
	spc (0.113366)
	eje (0.0988338)