Non-Coding RNA Search

Ss1.1-Mixn-0021b09.5

Sequence:


               
               ATTCATCAAGAGATTTGGGGACATTCACATATATGAATTCTATGCTTCCACTGAAGGCAA
TATCGGATTTATGAATTACACGAGAAAAATTGGTGCTGTTGGAAGAGTTAACTACCTACA
GAAAAAAGTCGTAACTTATGAACTAATTAAATATGATGTGGAGAAAGATGAACCTGTCCG
AGATGGAAATGGATACTGCATCAAAGTTCCCAAAGGTGAAGTTGGACTCCTGGTTTGCAA
AATCACAAATCTTACCCCATTTAATGGCTATGCCGGAGGAAAGACTCAGACAGAGAAGAA
AAAACTGAGAGATGTCTTTAAGAAAGGAGACGTCTATTTCAACAGTGGAGATCTCTTAAT
GATTGACCACGAAAATTTTATCTACTTCCATGACAGAGTTGGAGATACTTTCCGGTGGAA
AGGGGAAAATGTGGCCACCACTGAAGTCGCTGATGTAGTAGGAATGGTTGACTTTGTCCA
GGAAGTGAATGTTTATGGCGTGTCTGTACCAGGTCACGAAGGTCGAATTGGCATGGCCTC
AATCAAGATGAAGGAAAACCATGAATTTGATGGAAAGAAACTCTTTAAGCATGTGGCCGA
TTACCTGCCCAATTATGCAAGGCCCCGGTTTCTAAGAATACAGGACACCATTGAGATCAC
TGGAACTTTTAAACACCGAAAAGTGACCCTCGTGGAAGAGGGCTTTAACCCTGCGGTTAT
CAAAGATGCCTTGTATTTCTTGGATGATAAAGCAGAAACGTATGTGCCTATGACTGAGGA
TATTTACAATGCCATAAATGATAAAGCTCTGAAACTCTGAATGTTACCAGGAGGATAACT
TAGTGTATTTCCAGAAAGAACATGAAGGGACCTACCCAGTACAGCCACTTGATATAATCC
AACTTTAATTTGATTGACAGTTGTGAGGTGCAATTTTTTTATGCACACCAGGAAGGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCATCAAGAGATTTGGGGACATTCACATATATGAATTCTATGCTTCCACTGAAGGCAA
TATCGGATTTATGAATTACACGAGAAAAATTGGTGCTGTTGGAAGAGTTAACTACCTACA
GAAAAAAGTCGTAACTTATGAACTAATTAAATATGATGTGGAGAAAGATGAACCTGTCCG
AGATGGAAATGGATACTGCATCAAAGTTCCCAAAGGTGAAGTTGGACTCCTGGTTTGCAA
AATCACAAATCTTACCCCATTTAATGGCTATGCCGGAGGAAAGACTCAGACAGAGAAGAA
AAAACTGAGAGATGTCTTTAAGAAAGGAGACGTCTATTTCAACAGTGGAGATCTCTTAAT
GATTGACCACGAAAATTTTATCTACTTCCATGACAGAGTTGGAGATACTTTCCGGTGGAA
AGGGGAAAATGTGGCCACCACTGAAGTCGCTGATGTAGTAGGAATGGTTGACTTTGTCCA
GGAAGTGAATGTTTATGGCGTGTCTGTACCAGGTCACGAAGGTCGAATTGGCATGGCCTC
AATCAAGATGAAGGAAAACCATGAATTTGATGGAAAGAAACTCTTTAAGCATGTGGCCGA
TTACCTGCCCAATTATGCAAGGCCCCGGTTTCTAAGAATACAGGACACCATTGAGATCAC
TGGAACTTTTAAACACCGAAAAGTGACCCTCGTGGAAGAGGGCTTTAACCCTGCGGTTAT
CAAAGATGCCTTGTATTTCTTGGATGATAAAGCAGAAACGTATGTGCCTATGACTGAGGA
TATTTACAATGCCATAAATGATAAAGCTCTGAAACTCTGAATGTTACCAGGAGGATAACT
TAGTGTATTTCCAGAAAGAACATGAAGGGACCTACCCAGTACAGCCACTTGATATAATCC
AACTTTAATTTGATTGACAGTTGTGAGGTGCAATTTTTTTATGCACACCAGGAAGGGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56126527|gb|AAV76039.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56126527|gb|AAV76039.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               214-416, gnl|bosTau2|chr10 (42038252-42038454)
               

               
               214-416, gnl|Hg17|chr15 (48306467-48306669)
               

               
               214-416, gnl|Mm7|chr2 (126319700-126319902)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-416, gnl|bosTau2|chr10 (42038252-42038454)
               

               
               214-416, gnl|Hg17|chr15 (48306467-48306669)
               

               
               214-416, gnl|Mm7|chr2 (126319700-126319902)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               kid (0.518941)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.518941)
               

               
               lun (0.150489)

	214-416, gnl\|bosTau2\|chr10 (42038252-42038454)
	214-416, gnl\|Hg17\|chr15 (48306467-48306669)
	214-416, gnl\|Mm7\|chr2 (126319700-126319902)