Non-Coding RNA Search

Ss1.1-Mixn-0021c01.5

Sequence:


               
               TCCTATCTCTTTAAATGTCAATATATACATTCTATGACTACTGCTTTTTCTCTTTACTGG
GAGAAGTCTAGCTAGAATTCCTGTGTCACCAGAACAAGGAGATTAAAAATGTAATCGCTA
GAGAAACATGCTGTCATAGGAAAGGGCAACCATTTCTCCAGGTCCAGCTCCTGATAAAAT
TGTTCTAAGTTCTTCCCTCTGCTCATCAGACGTTATGTTTCTCCACTTGGGCACCCCCTG
CTTCTCCATCCTTAGCAGCATTCCATGTGCCACATCTTTCTTACCTCTCCCGCCAAATCG
TCCAGACGTACTGGATCTGTATCCAAGACTTTTGGTCTAGCCCATCACAAAGCCAGCACC
ACACTCATACAGGAAGAACACAGGGGCAGCAGACAGGTGCAAACATCAGAAACGCTGCAT
CTTTCTCGGTACCCTTGGTCCTGCATCTGCTATCTTTTCCAACTCCTAACCCCCAAGTCA
GTTTTTCTCTTTCTCTCTCCCTCCCTGCCCTTTTCCTTTCCTAGGCATTAAAGGAGGGAA
GGGGAGCATCATACTGTTTTACTGCTGTACACAATGATGCAAACCTATCAAACCCAGTCT
TGCTTTCAATTTGTTCTTGGACTTGCTGTTCATAGCACAGGGATGAAGTAAGGTGCCTGA
ACTTGGAGGAAAAGTTCCTCTTGGAGAGTCACATTATTCAAATACATATATAATGGAAGG
AATGACGCATCAGAATAGTTTCCTAAGAGCTTGTAATTGTGTTGTTATGGAGGTTTCACT
GGAATGATTCCATGAAAGCAAACTGGATGTCATTGTAACGAAGAAAGCTGACATTGACCC
GGGTGTAGTGTCCCCTGTCAGAACAGTCAGTCTGCAACCAGAGCTAGTAGAGCCATCAAG
GAATTCATCGGTGTGTCTCCAGTGCTGTCCAAGGTTAGGGAAGAAGTTGCCCAGCCAGAG
AACGTGGGCATCACACTTGCTCAACTGGTGTATCCCCACAACAGAGCGGGCTGCGTTCCA
AGGAGCCAATGAACTCCCCTTTTCTGGTTCCACGCTCGTCGAGCCACTTTCTGATAATAA
TTGGGGCTTTGATACTGTATTTTCTAGAGAGTGGCTGACCAATCAACACATCAATCAATC
ACATCCGTACTTCAATCTGTTAGACTATTTCCCTTTATGAATTAAACTGGTGTTCTGATT
CAGACCTCGGCTTTTTGTGATTTGGGTTGATATGAATCATTTGCCTTGCATGTGATGACA
TGTGGAACTACTGACAAAATCACGTTTCGGACCACTTTGACCTCGCCAAGCTGCCGCTTC
CCCTGCCCTCATCTCACTCCCCCAGCCAAGGCCTCACATTTGCTGATTTCAAGTTCTCTA
GTTAATCCCCTTTTACTTTAGTCTTTCAAGCATAAGTATCAATAAATGTGTTTTTCAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTATCTCTTTAAATGTCAATATATACATTCTATGACTACTGCTTTTTCTCTTTACTGG
GAGAAGTCTAGCTAGAATTCCTGTGTCACCAGAACAAGGAGATTAAAAATGTAATCGCTA
GAGAAACATGCTGTCATAGGAAAGGGCAACCATTTCTCCAGGTCCAGCTCCTGATAAAAT
TGTTCTAAGTTCTTCCCTCTGCTCATCAGACGTTATGTTTCTCCACTTGGGCACCCCCTG
CTTCTCCATCCTTAGCAGCATTCCATGTGCCACATCTTTCTTACCTCTCCCGCCAAATCG
TCCAGACGTACTGGATCTGTATCCAAGACTTTTGGTCTAGCCCATCACAAAGCCAGCACC
ACACTCATACAGGAAGAACACAGGGGCAGCAGACAGGTGCAAACATCAGAAACGCTGCAT
CTTTCTCGGTACCCTTGGTCCTGCATCTGCTATCTTTTCCAACTCCTAACCCCCAAGTCA
GTTTTTCTCTTTCTCTCTCCCTCCCTGCCCTTTTCCTTTCCTAGGCATTAAAGGAGGGAA
GGGGAGCATCATACTGTTTTACTGCTGTACACAATGATGCAAACCTATCAAACCCAGTCT
TGCTTTCAATTTGTTCTTGGACTTGCTGTTCATAGCACAGGGATGAAGTAAGGTGCCTGA
ACTTGGAGGAAAAGTTCCTCTTGGAGAGTCACATTATTCAAATACATATATAATGGAAGG
AATGACGCATCAGAATAGTTTCCTAAGAGCTTGTAATTGTGTTGTTATGGAGGTTTCACT
GGAATGATTCCATGAAAGCAAACTGGATGTCATTGTAACGAAGAAAGCTGACATTGACCC
GGGTGTAGTGTCCCCTGTCAGAACAGTCAGTCTGCAACCAGAGCTAGTAGAGCCATCAAG
GAATTCATCGGTGTGTCTCCAGTGCTGTCCAAGGTTAGGGAAGAAGTTGCCCAGCCAGAG
AACGTGGGCATCACACTTGCTCAACTGGTGTATCCCCACAACAGAGCGGGCTGCGTTCCA
AGGAGCCAATGAACTCCCCTTTTCTGGTTCCACGCTCGTCGAGCCACTTTCTGATAATAA
TTGGGGCTTTGATACTGTATTTTCTAGAGAGTGGCTGACCAATCAACACATCAATCAATC
ACATCCGTACTTCAATCTGTTAGACTATTTCCCTTTATGAATTAAACTGGTGTTCTGATT
CAGACCTCGGCTTTTTGTGATTTGGGTTGATATGAATCATTTGCCTTGCATGTGATGACA
TGTGGAACTACTGACAAAATCACGTTTCGGACCACTTTGACCTCGCCAAGCTGCCGCTTC
CCCTGCCCTCATCTCACTCCCCCAGCCAAGGCCTCACATTTGCTGATTTCAAGTTCTCTA
GTTAATCCCCTTTTACTTTAGTCTTTCAAGCATAAGTATCAATAAATGTGTTTTTCAAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               461-580, + strand, RNAz p=0.77208

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               461-580, + strand, RNAz p=0.77208

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_000133, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000133, +

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-1014, gnl|bosTau2|chrX (6535510-6536497)
               

               
               1-1014, gnl|Hg17|chrX (138369822-138370957)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1014, gnl|bosTau2|chrX (6535510-6536497)
               

               
               1-1014, gnl|Hg17|chrX (138369822-138370957)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               cli (0.764059)
               

               
               lun (0.451467)
               

               
               fli (0.405762)
               

               
               eli (0.151814)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.764059)
               

               
               lun (0.451467)
               

               
               fli (0.405762)
               

               
               eli (0.151814)

	1-1014, gnl\|bosTau2\|chrX (6535510-6536497)
	1-1014, gnl\|Hg17\|chrX (138369822-138370957)