Non-Coding RNA Search

Ss1.1-Mixn-0021d16.5

Sequence:


               
               GCTTAACTTCACATATTGATTTCCGTTAAAAAGCAGCCAGTAAATGGGGTGCATTTGAGT
TCTATTCTTTCCAAAGTACACTGTTTCAGACTTTATTATGGCCCTGGCCTGGCATATATA
TTTTATTTTATTATGCATGAGGTAATATGCACACTTTTAAAAAATACACCTCGAAGAATA
TATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAAGGGAATTTATAGCTTTGGGTG
GGGGGGAGTGAGGACAATTACTTATTGTATATGAAAACTCATTTTTCTTAGGGAAGGACA
CCAAAGCATGTGAGACTGGTTCCGTGGCCTCTTTGGATCTATAAATTAACCATATCACCA
CAGACATACTAACCAGCAGGAATGCCTTACCCTCATGTTTTTAAGTCTTAGATCATTCTG
TCTATGTATTACTAAAATTTTATGGCTTTTGTGCACATCTAGATTCTGTATCATGAAAAA
GATTAAGTTGTGGATCTGGTGGTTTCAGAAATGTGTGATCACCCAGAAGAAAATAATGGT
GTGATTTGGGGGGTTTTAGTGGGGTGTTTTGTTTTGGAAAGGGGGCAGTGGTTTTCTTTT
TTTGGCTATGCATTTGAACAATTTTGACATTTTAAGGATGCTTGTACATAATGCGTGCAT
ACCACTTTGTTCTTGGTTTGTAAATTAACTTTTATAAACTTTACCTTTTTTATACATAAA
ACAAAACCAAGTTTCTTAAGGCTACCTTTGTATTCTCTCCTGTACCTCTTGAGCCTTGAA
CTTTGACCTCTGCAGCAATAAAGCAGCATTTCTATGACACACACACAAGGTCATTTTTTT
AAGAAAAAGAATGCACAGAGTTGTTACATTTTTAAGTGCTGCATTTAAAAGATACAGTTA
CTCAGAATTCTCTAGTTTGAATAAATTCTTGCAAAGTATCCTTACTGTAATTTGTGATAC
AATGCTGTGCCCTAAAGTGTATTTTTTTACTAATAGACAATTTATTATGGCACATCAGCA
CGATTTCTGTCTAGATAACACACCACTACATTCTGTTAATCAATCATTAGGTGTGACTGA
ATTTCTTTTGCAGTTATTAAAAAAATCTCAAATTTCTAAATCTGCAGAATAAATCTTTTT
AAAATAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTAACTTCACATATTGATTTCCGTTAAAAAGCAGCCAGTAAATGGGGTGCATTTGAGT
TCTATTCTTTCCAAAGTACACTGTTTCAGACTTTATTATGGCCCTGGCCTGGCATATATA
TTTTATTTTATTATGCATGAGGTAATATGCACACTTTTAAAAAATACACCTCGAAGAATA
TATAACCAGTATAGTGGATTTAACAGAAATGTACAGCAAGGGAATTTATAGCTTTGGGTG
GGGGGGAGTGAGGACAATTACTTATTGTATATGAAAACTCATTTTTCTTAGGGAAGGACA
CCAAAGCATGTGAGACTGGTTCCGTGGCCTCTTTGGATCTATAAATTAACCATATCACCA
CAGACATACTAACCAGCAGGAATGCCTTACCCTCATGTTTTTAAGTCTTAGATCATTCTG
TCTATGTATTACTAAAATTTTATGGCTTTTGTGCACATCTAGATTCTGTATCATGAAAAA
GATTAAGTTGTGGATCTGGTGGTTTCAGAAATGTGTGATCACCCAGAAGAAAATAATGGT
GTGATTTGGGGGGTTTTAGTGGGGTGTTTTGTTTTGGAAAGGGGGCAGTGGTTTTCTTTT
TTTGGCTATGCATTTGAACAATTTTGACATTTTAAGGATGCTTGTACATAATGCGTGCAT
ACCACTTTGTTCTTGGTTTGTAAATTAACTTTTATAAACTTTACCTTTTTTATACATAAA
ACAAAACCAAGTTTCTTAAGGCTACCTTTGTATTCTCTCCTGTACCTCTTGAGCCTTGAA
CTTTGACCTCTGCAGCAATAAAGCAGCATTTCTATGACACACACACAAGGTCATTTTTTT
AAGAAAAAGAATGCACAGAGTTGTTACATTTTTAAGTGCTGCATTTAAAAGATACAGTTA
CTCAGAATTCTCTAGTTTGAATAAATTCTTGCAAAGTATCCTTACTGTAATTTGTGATAC
AATGCTGTGCCCTAAAGTGTATTTTTTTACTAATAGACAATTTATTATGGCACATCAGCA
CGATTTCTGTCTAGATAACACACCACTACATTCTGTTAATCAATCATTAGGTGTGACTGA
ATTTCTTTTGCAGTTATTAAAAAAATCTCAAATTTCTAAATCTGCAGAATAAATCTTTTT
AAAATAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               673-792, - strand, RNAz p=0.984863
               

               
               871-988, - strand, RNAz p=0.507823

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               673-792, - strand, RNAz p=0.984863
               

               
               871-988, - strand, RNAz p=0.507823

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               498-1147, gnl|bosTau2|chr21 (25086-25713)
               

               
               498-1147, gnl|Hg17|chr15 (27780312-27779649)
               

               
               498-1147, gnl|Mm7|chr7 (61154758-61154133)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               498-1147, gnl|bosTau2|chr21 (25086-25713)
               

               
               498-1147, gnl|Hg17|chr15 (27780312-27779649)
               

               
               498-1147, gnl|Mm7|chr7 (61154758-61154133)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               clu (0.957167)
               

               
               liv (0.877706)
               

               
               pla (0.534688)
               

               
               isp (0.451128)
               

               
               ova (0.387397)
               

               
               nep (0.36785)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.957167)
               

               
               liv (0.877706)
               

               
               pla (0.534688)
               

               
               isp (0.451128)
               

               
               ova (0.387397)
               

               
               nep (0.36785)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	673-792, - strand, RNAz p=0.984863
	871-988, - strand, RNAz p=0.507823

	498-1147, gnl\|bosTau2\|chr21 (25086-25713)
	498-1147, gnl\|Hg17\|chr15 (27780312-27779649)
	498-1147, gnl\|Mm7\|chr7 (61154758-61154133)

	clu (0.957167)
	liv (0.877706)
	pla (0.534688)
	isp (0.451128)
	ova (0.387397)
	nep (0.36785)
	eye (0.341006)
	vin (0.332557)
	mgp (0.230681)
	cty (0.20816)
	tes (0.207814)
	hea (0.204499)
	aor (0.195274)
	col (0.195008)
	sag (0.182715)
	gul (0.177588)
	ill (0.175593)
	mga (0.160205)
	bfe (0.149858)
	spl (0.143184)
	kid (0.129735)
	ese (0.126502)
	bla (0.124347)
	ecc (0.115035)
	nbm (0.0993246)