Ss1.1-Mixn-0021e11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGGACCCATTGTCTGGCTTTGTTTACTGGTCAGACTGGGGTGAACCAGCTAAAATCG AAAAAGCAGGAATGAATGGATTTGATAGACGGGCGCTGGTGACAACAGACATCCAGTGGC CTAACGGAATTACACTTGATCTTATAAAGGGCCGCCTCTATTGGCTGGATTCCAAATTGC ACATGTTATCCAGTGTGGACTTGAACGGCCAAGATCGGAGGATTGTCCTGAAGTCTCTGG AGTTCCTAGCTCACCCCCTCGCGCTAACGATATTTGAGGATCGTGTCTACTGGATAGATG GGGAAAATGAAGCAGTCTATGGTGCCAATAAATTCACTGGATCGGAGCTGGCCACTCTAG TTAACAACCTTAATGATGCCCAAGACATCATTGTCTATCATGAACTTGTCCAGCCATCAG GTAAAAATTGGTGTGAAGAAGACATGGAGAATGGAGGCTGTGAATACCTCTGCCTGCCAG CACCGCAGATCAATGACCACTCCCCAAAATACACCTGCTCCTGTCCCAATGGATACCGGC TAGAGGACAGTGGCCGGGAGTGCCAAAGGATCAATGTGACCACAGCAGTATCGGAGATAA GTGTTCCCCCAAAAGGGACTTCTGCTGCCTGGGCCATCCTTCCTCTCCTGCTCTTAGCAA TGGCAGCAGTAGGTGGCTACCTGATGTGGCGGAACTGGCAACACAAGAACATGAAAAGCA TGAATTTTGATAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCAATAGACATTG GTAGACACAGTGCTTCTGTTGGACATACGTACCCAGCAATATCAGTTGTAAGCACAGATG ATGACCTAGCTTGACCTCTGAGACAAGTCACCACCTTTGAGGTCTAAACCAGTAATACCC CCACATCGGAATGGTAACCAAGCCAGCAGCTGAAGCCTCTTTCTTCCTCCAGTTTGGAAG AACATCAAGATATCTTTGTGTGGATCAAGCCTGTATACTTAACCATTTTTATATAACTTT TGTAAATACACCCGTCCACATTCTACTTCAGCTTTGGATATGGTTACCAAAAGTATCTGT AACCCTTGAATTTCTCAACAGTATTGCCACCTCTGGCCAAATATGCACTTTCCCTAGAAA GCCATATTCCAGCAGTGAAACCTGTGCTATAGTGTATACCACCTGTACATACATTGTATA GGCCATCTGTAAATATCCCAGAGAACAATCACTATTCTTAAGCACTTTGAAAATATTTCT ATGTAAATTATTGTAAACTTTTTCAATGGTTGGGACAATGGCAATAGGATAAAACGGGTT ACTAAGATGAAATTGCCAAAAAAATTTGTAAACTAATTTTGTACTATGAATGAAATCTTT GACCTCAATGGAGGTTTGCAAAGACTAAGTGTTCAAACTACTGTACATTGTTTTTTCCAA GTGCTAAAAAAATTAAACCAAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGGACCCATTGTCTGGCTTTGTTTACTGGTCAGACTGGGGTGAACCAGCTAAAATCG AAAAAGCAGGAATGAATGGATTTGATAGACGGGCGCTGGTGACAACAGACATCCAGTGGC CTAACGGAATTACACTTGATCTTATAAAGGGCCGCCTCTATTGGCTGGATTCCAAATTGC ACATGTTATCCAGTGTGGACTTGAACGGCCAAGATCGGAGGATTGTCCTGAAGTCTCTGG AGTTCCTAGCTCACCCCCTCGCGCTAACGATATTTGAGGATCGTGTCTACTGGATAGATG GGGAAAATGAAGCAGTCTATGGTGCCAATAAATTCACTGGATCGGAGCTGGCCACTCTAG TTAACAACCTTAATGATGCCCAAGACATCATTGTCTATCATGAACTTGTCCAGCCATCAG GTAAAAATTGGTGTGAAGAAGACATGGAGAATGGAGGCTGTGAATACCTCTGCCTGCCAG CACCGCAGATCAATGACCACTCCCCAAAATACACCTGCTCCTGTCCCAATGGATACCGGC TAGAGGACAGTGGCCGGGAGTGCCAAAGGATCAATGTGACCACAGCAGTATCGGAGATAA GTGTTCCCCCAAAAGGGACTTCTGCTGCCTGGGCCATCCTTCCTCTCCTGCTCTTAGCAA TGGCAGCAGTAGGTGGCTACCTGATGTGGCGGAACTGGCAACACAAGAACATGAAAAGCA TGAATTTTGATAATCCTGTGTACTTGAAGACCACTGAAGAGGACCTGTCAATAGACATTG GTAGACACAGTGCTTCTGTTGGACATACGTACCCAGCAATATCAGTTGTAAGCACAGATG ATGACCTAGCTTGACCTCTGAGACAAGTCACCACCTTTGAGGTCTAAACCAGTAATACCC CCACATCGGAATGGTAACCAAGCCAGCAGCTGAAGCCTCTTTCTTCCTCCAGTTTGGAAG AACATCAAGATATCTTTGTGTGGATCAAGCCTGTATACTTAACCATTTTTATATAACTTT TGTAAATACACCCGTCCACATTCTACTTCAGCTTTGGATATGGTTACCAAAAGTATCTGT AACCCTTGAATTTCTCAACAGTATTGCCACCTCTGGCCAAATATGCACTTTCCCTAGAAA GCCATATTCCAGCAGTGAAACCTGTGCTATAGTGTATACCACCTGTACATACATTGTATA GGCCATCTGTAAATATCCCAGAGAACAATCACTATTCTTAAGCACTTTGAAAATATTTCT ATGTAAATTATTGTAAACTTTTTCAATGGTTGGGACAATGGCAATAGGATAAAACGGGTT ACTAAGATGAAATTGCCAAAAAAATTTGTAAACTAATTTTGTACTATGAATGAAATCTTT GACCTCAATGGAGGTTTGCAAAGACTAAGTGTTCAAACTACTGTACATTGTTTTTTCCAA GTGCTAAAAAAATTAAACCAAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 938-1215, - strand, RNAz p=0.991214 | |
| 1296-1464, + strand, RNAz p=0.757197 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 938-1215, - strand, RNAz p=0.991214 | |
| 1296-1464, + strand, RNAz p=0.757197 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of D16494, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 19-138, gnl|bosTau2|chr8 (17166857-17166738) | |
| 19-138, gnl|Hg17|chr9 (2637473-2637592) | |
| 19-138, gnl|Mm7|chr19 (26943089-26943208) | |
| 273-423, gnl|bosTau2|chr8 (17165702-17165552) | |
| 273-423, gnl|canFam2|chr1 (94333692-94333787) | |
| 273-423, gnl|canFam2|chr1 (94333688-94333787) | |
| 273-423, gnl|danRer3|chr10 (1248703-1248604) | |
| 273-423, gnl|dasNov1|scaffold_2365 (95058-95153) | |
| 273-423, gnl|dasNov1|scaffold_2365 (95054-95153) | |
| 273-423, gnl|echTel1|scaffold_298822 (20243-20338) | |
| 273-423, gnl|echTel1|scaffold_298822 (20239-20338) | |
| 273-423, gnl|fr1|chrUn (202341473-202341568) | |
| 273-423, gnl|fr1|chrUn (202341478-202341568) | |
| 273-423, gnl|galGal2|chrZ_random (850262-850358) | |
| 273-423, gnl|hg17|chr4 (185368753-185368843) | |
| 273-423, gnl|hg17|chr9 (2638658-2638757) | |
| 273-423, gnl|Hg17|chr9 (2638663-2638813) | |
| 273-423, gnl|loxAfr1|scaffold_32385 (19890-19989) | |
| 273-423, gnl|mm7|chr19 (26944213-26944312) | |
| 273-423, gnl|Mm7|chr19 (26944218-26944368) | |
| 273-423, gnl|mm7|chr8 (45890286-45890192) | |
| 273-423, gnl|monDom2|scaffold_17 (25127589-25127688) | |
| 273-423, gnl|oryCun1|scaffold_202384 (41851-41928) | |
| 273-423, gnl|oryCun1|scaffold_202384 (41839-41928) | |
| 273-423, gnl|panTro1|chr11 (2601057-2601156) | |
| 273-423, gnl|panTro1|chr3 (203579016-203579106) | |
| 273-423, gnl|rheMac2|chr15 (74592330-74592231) | |
| 273-423, gnl|rheMac2|chr5 (176190095-176190185) | |
| 273-423, gnl|rn3|chr1 (230856675-230856770) | |
| 273-423, gnl|rn3|chr1 (230856671-230856770) | |
| 273-423, gnl|tetNig1|chrUn_random (19596835-19596925) | |
| 273-423, gnl|xenTro1|scaffold_52 (2997498-2997409) | |
| 273-423, gnl|xenTro1|scaffold_52 (2997508-2997409) | |
| 819-1464, gnl|bosTau2|chr8 (17161229-17160573) | |
| 819-1464, gnl|Hg17|chr9 (2643833-2644474) | |
| 819-1464, gnl|Mm7|chr19 (26949130-26949777) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-138, gnl|bosTau2|chr8 (17166857-17166738) | |
| 19-138, gnl|Hg17|chr9 (2637473-2637592) | |
| 19-138, gnl|Mm7|chr19 (26943089-26943208) | |
| 273-423, gnl|bosTau2|chr8 (17165702-17165552) | |
| 273-423, gnl|canFam2|chr1 (94333692-94333787) | |
| 273-423, gnl|canFam2|chr1 (94333688-94333787) | |
| 273-423, gnl|danRer3|chr10 (1248703-1248604) | |
| 273-423, gnl|dasNov1|scaffold_2365 (95058-95153) | |
| 273-423, gnl|dasNov1|scaffold_2365 (95054-95153) | |
| 273-423, gnl|echTel1|scaffold_298822 (20243-20338) | |
| 273-423, gnl|echTel1|scaffold_298822 (20239-20338) | |
| 273-423, gnl|fr1|chrUn (202341473-202341568) | |
| 273-423, gnl|fr1|chrUn (202341478-202341568) | |
| 273-423, gnl|galGal2|chrZ_random (850262-850358) | |
| 273-423, gnl|hg17|chr4 (185368753-185368843) | |
| 273-423, gnl|hg17|chr9 (2638658-2638757) | |
| 273-423, gnl|Hg17|chr9 (2638663-2638813) | |
| 273-423, gnl|loxAfr1|scaffold_32385 (19890-19989) | |
| 273-423, gnl|mm7|chr19 (26944213-26944312) | |
| 273-423, gnl|Mm7|chr19 (26944218-26944368) | |
| 273-423, gnl|mm7|chr8 (45890286-45890192) | |
| 273-423, gnl|monDom2|scaffold_17 (25127589-25127688) | |
| 273-423, gnl|oryCun1|scaffold_202384 (41851-41928) | |
| 273-423, gnl|oryCun1|scaffold_202384 (41839-41928) | |
| 273-423, gnl|panTro1|chr11 (2601057-2601156) | |
| 273-423, gnl|panTro1|chr3 (203579016-203579106) | |
| 273-423, gnl|rheMac2|chr15 (74592330-74592231) | |
| 273-423, gnl|rheMac2|chr5 (176190095-176190185) | |
| 273-423, gnl|rn3|chr1 (230856675-230856770) | |
| 273-423, gnl|rn3|chr1 (230856671-230856770) | |
| 273-423, gnl|tetNig1|chrUn_random (19596835-19596925) | |
| 273-423, gnl|xenTro1|scaffold_52 (2997498-2997409) | |
| 273-423, gnl|xenTro1|scaffold_52 (2997508-2997409) | |
| 819-1464, gnl|bosTau2|chr8 (17161229-17160573) | |
| 819-1464, gnl|Hg17|chr9 (2643833-2644474) | |
| 819-1464, gnl|Mm7|chr19 (26949130-26949777) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| che (0.408942) | |
| ste (0.405625) | |
| elu (0.385356) | |
| bfe (0.299715) | |
| fat (0.294855) | |
| ldo (0.291008) | |
| bla (0.248694) | |
| hea (0.204499) | |
| gul (0.177588) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.408942) | |
| ste (0.405625) | |
| elu (0.385356) | |
| bfe (0.299715) | |
| fat (0.294855) | |
| ldo (0.291008) | |
| bla (0.248694) | |
| hea (0.204499) | |
| gul (0.177588) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) |