Non-Coding RNA Search

Ss1.1-Mixn-0021f21.5

Sequence:


               
               TGAAGATTCAAAGGAAGGGAGAGGATGACTCCCCACCCCACTCCCCGATTTCGGAGAAGG
TCCAAGCAGGTGACTCTGGCAGAGGAGCTGAGGGAGGCGAGGGCCATGGGAGCTGTGACC
GGAGGGGCCCAGAGAGGCCCTGGTGGCTTTGGTGCCTGCCCTGCCCCACCCCCACCCGTG
CGACCTGTTTGCCCCTCTCTTTAGACCTCCGTTTGGCCCAAGGCACTCTAGTTAAGTGAG
TGCCACTGGCCACCTCAGATGGGCACCGGGCCCTCCAGACCCAGGCCTCGCTGACGCAGC
CCCCGCCCCCGGGAGGTGGGAGGCCAGGCAAGCCTGACTTCGTGTTGCCCTAAGTGTGCC
TGCGCCCCTGCCCCCAGAGCTCACGGTAGAGACCCCCAGAGAGGGAGGCGTCAGGAGTCC
GGGTGCCACAGAGCCTCTGTCTCCGCGGGGGCGGCCGAGATGCTCCCCCCTGCCTCCGGG
ACAGAGGGAGGGTGCGGCTCAGGCCCAGGCGGGGCACGTCTGCGGACCCCAGGCGTGCTC
CTTGCAGCCGGTGAGAAGCACAGGGGGAGGGGTGGGGGCCGAGGGACCTGGCGCGTGCGT
GTGCGTGTGTGCGTGTGTTACTGCTTTGCGTGTGTACGCCCCACCTGAGAGGAAGGACCC
CTAGCAAACCAGTTTACTTGCCGACTTGCCGTTTTTGCCAAAACCAAGATGTTAGAGGCC
GGGTCCGTCTCCAGCGTCGGATCCCGGCCCGGGGCCCCGCACGTGCCCCGCCAGGGGGCT
CTGTCTGCAGCCAGATTTTGAAAACTTGTTCGTTTCACCGGGCGGGCTCTGTTCCGCAGT
GGCCTTTCGGTATGTGCCTCCTGAGAAATTCGTCTCTTTTTGTACAAATAGCAATGTGTT
GAAAACGTATTTCCTGAAATAAATGTTCCAGATGCAAACCCGGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGATTCAAAGGAAGGGAGAGGATGACTCCCCACCCCACTCCCCGATTTCGGAGAAGG
TCCAAGCAGGTGACTCTGGCAGAGGAGCTGAGGGAGGCGAGGGCCATGGGAGCTGTGACC
GGAGGGGCCCAGAGAGGCCCTGGTGGCTTTGGTGCCTGCCCTGCCCCACCCCCACCCGTG
CGACCTGTTTGCCCCTCTCTTTAGACCTCCGTTTGGCCCAAGGCACTCTAGTTAAGTGAG
TGCCACTGGCCACCTCAGATGGGCACCGGGCCCTCCAGACCCAGGCCTCGCTGACGCAGC
CCCCGCCCCCGGGAGGTGGGAGGCCAGGCAAGCCTGACTTCGTGTTGCCCTAAGTGTGCC
TGCGCCCCTGCCCCCAGAGCTCACGGTAGAGACCCCCAGAGAGGGAGGCGTCAGGAGTCC
GGGTGCCACAGAGCCTCTGTCTCCGCGGGGGCGGCCGAGATGCTCCCCCCTGCCTCCGGG
ACAGAGGGAGGGTGCGGCTCAGGCCCAGGCGGGGCACGTCTGCGGACCCCAGGCGTGCTC
CTTGCAGCCGGTGAGAAGCACAGGGGGAGGGGTGGGGGCCGAGGGACCTGGCGCGTGCGT
GTGCGTGTGTGCGTGTGTTACTGCTTTGCGTGTGTACGCCCCACCTGAGAGGAAGGACCC
CTAGCAAACCAGTTTACTTGCCGACTTGCCGTTTTTGCCAAAACCAAGATGTTAGAGGCC
GGGTCCGTCTCCAGCGTCGGATCCCGGCCCGGGGCCCCGCACGTGCCCCGCCAGGGGGCT
CTGTCTGCAGCCAGATTTTGAAAACTTGTTCGTTTCACCGGGCGGGCTCTGTTCCGCAGT
GGCCTTTCGGTATGTGCCTCCTGAGAAATTCGTCTCTTTTTGTACAAATAGCAATGTGTT
GAAAACGTATTTCCTGAAATAAATGTTCCAGATGCAAACCCGGAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-945, gnl|bosTau2|chr19 (48457416-48456442)
               

               
               1-945, gnl|Hg17|chr17 (73007111-73008273)
               

               
               1-945, gnl|Mm7|chr11 (117470315-117471359)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-945, gnl|bosTau2|chr19 (48457416-48456442)
               

               
               1-945, gnl|Hg17|chr17 (73007111-73008273)
               

               
               1-945, gnl|Mm7|chr11 (117470315-117471359)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               cag (0.453583)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               fty (0.351679)
               

               
               ecc (0.345105)
               

               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               med (0.232504)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.453583)
               

               
               lnt (0.426925)
               

               
               amn (0.417711)
               

               
               fty (0.351679)
               

               
               ecc (0.345105)
               

               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               med (0.232504)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-945, gnl\|bosTau2\|chr19 (48457416-48456442)
	1-945, gnl\|Hg17\|chr17 (73007111-73008273)
	1-945, gnl\|Mm7\|chr11 (117470315-117471359)

	cag (0.453583)
	lnt (0.426925)
	amn (0.417711)
	fty (0.351679)
	ecc (0.345105)
	pla (0.267344)
	ese (0.253004)
	med (0.232504)
	fbs (0.175346)
	eye (0.170503)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	hyp (0.142837)
	nmm (0.132802)
	cov (0.132153)
	eru (0.120048)
	clu (0.119646)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)
	eje (0.0988338)