Non-Coding RNA Search

Ss1.1-Mixn-0021g17.5

Sequence:


               
               GGTAGCGTTTCTCCCCGACCTCGGCAGCCTTGTCTGGTCAGGCAGGGTGCACACTGCACC
CTTACTTTGCAGAGGGGACACCGAATGCCGCTTGTCCCCTCGCCCACTTAGTGTGGTGGC
TTCTCAAATGGCTCCTGACCAGGGCCTAACTCTGTGCATCTCCCAGGAACCCAGGGTGGC
TCTGGCTGTCTCATGGGCTGCCTCCAACTGCCATAGGGCCTCCCCTCCAGGGCCTTGAGG
CGGCACAGGGAATGCTTGGCGGGGCTGGGGCGTGCCCTCTGCCCCTCTTGTCTTCTGGTG
AGTCAGGAGCCACATGCCTTGGGCAGGCTTCCTTTACTTCAGCCCGAGCAGCATTTATTC
TGTTTCCCCAAAGTTTCTGTGAACTCAGGCCTTTCACTAGGGACCGTCTGTCCTGTTGTG
CTGAAGCTTTGGTCTGAGTGTCTGGCCGGGGCTCAGTCACATCTTCAGGAAAAGGCCAGG
TCTCCGGAGGTGGCCCTAATTAGGGGAGGGACCTCCAGGGATAGTGAGGCAGGAGGGAAG
GTACTGGTGCCTGGCTCAGCCTGTTAGCCCCCGGCCCAGGCCCCCTGATGTGCCTGCCCA
GCCGTATTCCTAGACAGCGGCCTCTGAGACTTGCTTTTTCTCACCCATTCCGTGCAGAAC
TCACTGGACAGGAGGCAGGAGGCAGGAGGCAGCCAGTCTAGACCTGAAGCCCTCAGCTGT
TCCAGGAGGGGCTTCCCTCACAAAGAGGAAGGGGGCCCTGCTCAGTTGCGGGCTGGGGGG
TTCAGGAAGCAAGGCCAAGTGTAGTTGTGGGTAGAAAACCTTTCCCTACTTCACAGGAGC
GCACGTGACATTGGGCGCCTGGCTGTAGCTTGCTCGCACTCTGGCCTGGTGATGGCCAAG
GTAGTTTTTAGAAATCTACTTAAAATACCTATCTGTTATCTATTTACGGTGTTTTTTCTG
ACTACGCAAATGTAAATAATATAATCTGCAGTGCAAAGTCCTTGGCAATAACTGTTGTAT
ATTATGTTAAAAACACTGGAGAATGCGACCACCGTGGATTGTCCTTCCCTCTCTGGGGCA
ACGATTCCCTGTAGGACTCTGAACTTGCAACCTTCGGCGTGGCTGAAGCAGCAGCCTGCA
TGTGTGGACTGTCACCAGTGCCTCGCCCAGAGATGCCTGGCCTTCATCCAGTGGGACTCT
CTGCCACCCCGACTCCCACAGGCAGCGCCCACACTGTGGCTCTTTCACACCATGTTGGAC
TCTGCAATAGACTGGCCCTCTTGTCTGGCTGCTGCAATTTGTCTGTAATGCCCTGACATG
TTGCATTTTCCCCATTTGGATGACTACAAATAAAAGCTTCTGTCTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTAGCGTTTCTCCCCGACCTCGGCAGCCTTGTCTGGTCAGGCAGGGTGCACACTGCACC
CTTACTTTGCAGAGGGGACACCGAATGCCGCTTGTCCCCTCGCCCACTTAGTGTGGTGGC
TTCTCAAATGGCTCCTGACCAGGGCCTAACTCTGTGCATCTCCCAGGAACCCAGGGTGGC
TCTGGCTGTCTCATGGGCTGCCTCCAACTGCCATAGGGCCTCCCCTCCAGGGCCTTGAGG
CGGCACAGGGAATGCTTGGCGGGGCTGGGGCGTGCCCTCTGCCCCTCTTGTCTTCTGGTG
AGTCAGGAGCCACATGCCTTGGGCAGGCTTCCTTTACTTCAGCCCGAGCAGCATTTATTC
TGTTTCCCCAAAGTTTCTGTGAACTCAGGCCTTTCACTAGGGACCGTCTGTCCTGTTGTG
CTGAAGCTTTGGTCTGAGTGTCTGGCCGGGGCTCAGTCACATCTTCAGGAAAAGGCCAGG
TCTCCGGAGGTGGCCCTAATTAGGGGAGGGACCTCCAGGGATAGTGAGGCAGGAGGGAAG
GTACTGGTGCCTGGCTCAGCCTGTTAGCCCCCGGCCCAGGCCCCCTGATGTGCCTGCCCA
GCCGTATTCCTAGACAGCGGCCTCTGAGACTTGCTTTTTCTCACCCATTCCGTGCAGAAC
TCACTGGACAGGAGGCAGGAGGCAGGAGGCAGCCAGTCTAGACCTGAAGCCCTCAGCTGT
TCCAGGAGGGGCTTCCCTCACAAAGAGGAAGGGGGCCCTGCTCAGTTGCGGGCTGGGGGG
TTCAGGAAGCAAGGCCAAGTGTAGTTGTGGGTAGAAAACCTTTCCCTACTTCACAGGAGC
GCACGTGACATTGGGCGCCTGGCTGTAGCTTGCTCGCACTCTGGCCTGGTGATGGCCAAG
GTAGTTTTTAGAAATCTACTTAAAATACCTATCTGTTATCTATTTACGGTGTTTTTTCTG
ACTACGCAAATGTAAATAATATAATCTGCAGTGCAAAGTCCTTGGCAATAACTGTTGTAT
ATTATGTTAAAAACACTGGAGAATGCGACCACCGTGGATTGTCCTTCCCTCTCTGGGGCA
ACGATTCCCTGTAGGACTCTGAACTTGCAACCTTCGGCGTGGCTGAAGCAGCAGCCTGCA
TGTGTGGACTGTCACCAGTGCCTCGCCCAGAGATGCCTGGCCTTCATCCAGTGGGACTCT
CTGCCACCCCGACTCCCACAGGCAGCGCCCACACTGTGGCTCTTTCACACCATGTTGGAC
TCTGCAATAGACTGGCCCTCTTGTCTGGCTGCTGCAATTTGTCTGTAATGCCCTGACATG
TTGCATTTTCCCCATTTGGATGACTACAAATAAAAGCTTCTGTCTTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               212-322, - strand, RNAz p=0.61818

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-322, - strand, RNAz p=0.61818

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               76-1366, gnl|bosTau2|chr11 (75666808-75665569)
               

               
               76-1366, gnl|Hg17|chr9 (122952751-122951332)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-1366, gnl|bosTau2|chr11 (75666808-75665569)
               

               
               76-1366, gnl|Hg17|chr9 (122952751-122951332)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)

	76-1366, gnl\|bosTau2\|chr11 (75666808-75665569)
	76-1366, gnl\|Hg17\|chr9 (122952751-122951332)

	ece (0.229305)
	tes (0.207814)
	fcc (0.197785)
	fty (0.17584)
	eye (0.170503)
	lnt (0.142308)
	ova (0.129132)
	ebs (0.118301)