Ss1.1-Mixn-0021h05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTTTCTTCCTCCTTCATTTTTCTTCCAAAATTGCTGCTGGTGGGTGAAAAAAATGCC GCAGCTGAACGGCGGTGGAGGAGATGACCTAGGCGCCAACGACGAACTGATTTCCTTCAA AGACGAGGGCGAGCAGGAGGAGAAGAGCTCCGAAAACTCCTCGGCAGAGAGGGATTTAGC TGATGTCAAATCGTCTCTAGTCAATGAATCAGAAACGAATCAAAACAGCTCCTCCGATTC CGAGGCGGAAAGACGGCCTCCGCCTCGCTCCGAAAGTTTCCGAGATAAATCCCGGGAAAG TTTGGAAGAAGCGGCCAAAAGGCAAGATGGAGGGCTCTTTAAGGGGCCACCGTATCCCGG CTACCCCTTCATCATGATCCCCGACCTGACGAGCCCCTACCTCCCCAACGGATCGCTCTC GCCCACCGCCCGAACCCTCCATTTTCAGTCCGGGAGCACACATTACTCTGCGTACAAAAC GATTGAACACCAGATTGCAATTCAGTATCTTCAGATGAAATGGCCGCTGCTTGACGTTCA GGCGGGGACCCTCCAGAGCAGACAAGCCCTCAAGGATGCGCGCTCTCCGTCGCCGGCACA CATCGTCTGCCCCCTCCCTTGCTGCACTCAGGGACATGACTGTCAGCACTTCTACCCCCC CTCAGACTTCACTGTCAGCACTCAAGTCTTCAGGGACATGAAAAGGAG------------ ------------------------CATGTCGAACAAAGTGCCGGTTGTGCAACACCCTCA CCATGTCCACCCTCTCACGCCTCTTATCACGTACAGCAATGAACACTTCACGCCGGGAAA CCCACCTCCACACTTACCAGCTGACGTAGACCCCAAAACAGGAATCCCACGGCCTCCGCA CCCTCCAGATATATCTCCGTATTACCCGCTATCGCCCGGCACCGTAGGACAAATCCCCCA TCCGCTAGGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTTTCTTCCTCCTTCATTTTTCTTCCAAAATTGCTGCTGGTGGGTGAAAAAAATGCC GCAGCTGAACGGCGGTGGAGGAGATGACCTAGGCGCCAACGACGAACTGATTTCCTTCAA AGACGAGGGCGAGCAGGAGGAGAAGAGCTCCGAAAACTCCTCGGCAGAGAGGGATTTAGC TGATGTCAAATCGTCTCTAGTCAATGAATCAGAAACGAATCAAAACAGCTCCTCCGATTC CGAGGCGGAAAGACGGCCTCCGCCTCGCTCCGAAAGTTTCCGAGATAAATCCCGGGAAAG TTTGGAAGAAGCGGCCAAAAGGCAAGATGGAGGGCTCTTTAAGGGGCCACCGTATCCCGG CTACCCCTTCATCATGATCCCCGACCTGACGAGCCCCTACCTCCCCAACGGATCGCTCTC GCCCACCGCCCGAACCCTCCATTTTCAGTCCGGGAGCACACATTACTCTGCGTACAAAAC GATTGAACACCAGATTGCAATTCAGTATCTTCAGATGAAATGGCCGCTGCTTGACGTTCA GGCGGGGACCCTCCAGAGCAGACAAGCCCTCAAGGATGCGCGCTCTCCGTCGCCGGCACA CATCGTCTGCCCCCTCCCTTGCTGCACTCAGGGACATGACTGTCAGCACTTCTACCCCCC CTCAGACTTCACTGTCAGCACTCAAGTCTTCAGGGACATGAAAAGGAG------------ ------------------------CATGTCGAACAAAGTGCCGGTTGTGCAACACCCTCA CCATGTCCACCCTCTCACGCCTCTTATCACGTACAGCAATGAACACTTCACGCCGGGAAA CCCACCTCCACACTTACCAGCTGACGTAGACCCCAAAACAGGAATCCCACGGCCTCCGCA CCCTCCAGATATATCTCCGTATTACCCGCTATCGCCCGGCACCGTAGGACAAATCCCCCA TCCGCTAGGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 73-708, - strand, RNAz p=0.997681 | |
| 608-708, - strand, RNAz p=0.921611 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 73-708, - strand, RNAz p=0.997681 | |
| 608-708, - strand, RNAz p=0.921611 |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 73-245, gnl|bosTau2|chr11 (34999201-34999029) | |
| 73-245, gnl|canFam2|chr17 (42921550-42921370) | |
| 73-245, gnl|danRer3|chr12 (28792208-28792012) | |
| 73-245, gnl|echTel1|scaffold_107763 (367-167) | |
| 73-245, gnl|fr1|chrUn (170920558-170920745) | |
| 73-245, gnl|galGal2|chrUn (74866842-74866641) | |
| 73-245, gnl|hg17|chr10 (114700504-114700704) | |
| 73-245, gnl|Hg17|chr2 (85272543-85272715) | |
| 73-245, gnl|loxAfr1|scaffold_101468 (25798-25998) | |
| 73-245, gnl|mm7|chr19 (55657316-55657516) | |
| 73-245, gnl|Mm7|chr6 (72806812-72806640) | |
| 73-245, gnl|monDom2|scaffold_14 (49414780-49414580) | |
| 73-245, gnl|oryCun1|scaffold_199828 (4896-5101) | |
| 73-245, gnl|panTro1|chr8 (116807102-116807302) | |
| 73-245, gnl|rheMac2|chr13 (85693468-85693646) | |
| 73-245, gnl|rn3|chr1 (262243338-262243538) | |
| 73-245, gnl|tetNig1|chr2_random (344441-344245) | |
| 73-245, gnl|xenTro1|scaffold_217 (1606558-1606365) | |
| 503-606, gnl|bosTau2|chr26 (22361641-22361744) | |
| 503-606, gnl|canFam2|chr28 (27044527-27044701) | |
| 503-606, gnl|danRer3|chr12 (28735683-28735507) | |
| 503-606, gnl|dasNov1|scaffold_164 (141858-141681) | |
| 503-606, gnl|echTel1|scaffold_299119 (5424-5254) | |
| 503-606, gnl|fr1|chrUn (43280303-43280132) | |
| 503-606, gnl|galGal2|chr6 (26167831-26168018) | |
| 503-606, gnl|hg17|chr10 (114789733-114789910) | |
| 503-606, gnl|Hg17|chr10 (114789771-114789874) | |
| 503-606, gnl|loxAfr1|scaffold_53799 (1852-1674) | |
| 503-606, gnl|mm7|chr19 (55732716-55732874) | |
| 503-606, gnl|Mm7|chr19 (55732737-55732840) | |
| 503-606, gnl|monDom2|scaffold_14 (49320881-49320726) | |
| 503-606, gnl|oryCun1|scaffold_106999 (4573-4397) | |
| 503-606, gnl|panTro1|chr8 (116897138-116897315) | |
| 503-606, gnl|rheMac2|chr9 (112699162-112699339) | |
| 503-606, gnl|rn3|chr1 (262317260-262317418) | |
| 503-606, gnl|tetNig1|chr2_random (318553-318382) | |
| 503-606, gnl|xenTro1|scaffold_510 (585898-585730) | |
| 608-709, gnl|bosTau2|chr26 (22409985-22410086) | |
| 608-709, gnl|canFam2|chr28 (27092164-27092361) | |
| 608-709, gnl|dasNov1|scaffold_164 (96292-96110) | |
| 608-709, gnl|echTel1|scaffold_278535 (51700-51531) | |
| 608-709, gnl|hg17|chr10 (114839032-114839227) | |
| 608-709, gnl|Hg17|chr10 (114839149-114839250) | |
| 608-709, gnl|loxAfr1|scaffold_63 (218895-218700) | |
| 608-709, gnl|mm7|chr19 (55778331-55778475) | |
| 608-709, gnl|Mm7|chr19 (55778397-55778498) | |
| 608-709, gnl|oryCun1|scaffold_199828 (126706-126900) | |
| 608-709, gnl|panTro1|chr8 (116947101-116947296) | |
| 608-709, gnl|rheMac2|chr9 (112750557-112750752) | |
| 608-709, gnl|rn3|chr1 (262365863-262366007) | |
| 712-846, gnl|bosTau2|chr26 (22496100-22496234) | |
| 712-846, gnl|canFam2|chr28 (27138815-27138978) | |
| 712-846, gnl|danRer3|chr12 (28667370-28667214) | |
| 712-846, gnl|dasNov1|scaffold_164 (49042-48877) | |
| 712-846, gnl|echTel1|scaffold_280843 (814-650) | |
| 712-846, gnl|fr1|chrUn (43244490-43244325) | |
| 712-846, gnl|galGal2|chr6 (26251232-26251406) | |
| 712-846, gnl|hg17|chr10 (114890909-114891071) | |
| 712-846, gnl|Hg17|chr10 (114890932-114891066) | |
| 712-846, gnl|loxAfr1|scaffold_69423 (4442-4279) | |
| 712-846, gnl|mm7|chr19 (55823373-55823537) | |
| 712-846, gnl|Mm7|chr19 (55823398-55823532) | |
| 712-846, gnl|monDom2|scaffold_14 (49207678-49207512) | |
| 712-846, gnl|oryCun1|scaffold_136723 (7686-7524) | |
| 712-846, gnl|panTro1|chr8 (116999166-116999328) | |
| 712-846, gnl|rheMac2|chr9 (112802511-112802673) | |
| 712-846, gnl|rn3|chr1 (262411198-262411362) | |
| 712-846, gnl|tetNig1|chr2_random (281827-281669) | |
| 712-846, gnl|xenTro1|scaffold_510 (531840-531667) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-245, gnl|bosTau2|chr11 (34999201-34999029) | |
| 73-245, gnl|canFam2|chr17 (42921550-42921370) | |
| 73-245, gnl|danRer3|chr12 (28792208-28792012) | |
| 73-245, gnl|echTel1|scaffold_107763 (367-167) | |
| 73-245, gnl|fr1|chrUn (170920558-170920745) | |
| 73-245, gnl|galGal2|chrUn (74866842-74866641) | |
| 73-245, gnl|hg17|chr10 (114700504-114700704) | |
| 73-245, gnl|Hg17|chr2 (85272543-85272715) | |
| 73-245, gnl|loxAfr1|scaffold_101468 (25798-25998) | |
| 73-245, gnl|mm7|chr19 (55657316-55657516) | |
| 73-245, gnl|Mm7|chr6 (72806812-72806640) | |
| 73-245, gnl|monDom2|scaffold_14 (49414780-49414580) | |
| 73-245, gnl|oryCun1|scaffold_199828 (4896-5101) | |
| 73-245, gnl|panTro1|chr8 (116807102-116807302) | |
| 73-245, gnl|rheMac2|chr13 (85693468-85693646) | |
| 73-245, gnl|rn3|chr1 (262243338-262243538) | |
| 73-245, gnl|tetNig1|chr2_random (344441-344245) | |
| 73-245, gnl|xenTro1|scaffold_217 (1606558-1606365) | |
| 503-606, gnl|bosTau2|chr26 (22361641-22361744) | |
| 503-606, gnl|canFam2|chr28 (27044527-27044701) | |
| 503-606, gnl|danRer3|chr12 (28735683-28735507) | |
| 503-606, gnl|dasNov1|scaffold_164 (141858-141681) | |
| 503-606, gnl|echTel1|scaffold_299119 (5424-5254) | |
| 503-606, gnl|fr1|chrUn (43280303-43280132) | |
| 503-606, gnl|galGal2|chr6 (26167831-26168018) | |
| 503-606, gnl|hg17|chr10 (114789733-114789910) | |
| 503-606, gnl|Hg17|chr10 (114789771-114789874) | |
| 503-606, gnl|loxAfr1|scaffold_53799 (1852-1674) | |
| 503-606, gnl|mm7|chr19 (55732716-55732874) | |
| 503-606, gnl|Mm7|chr19 (55732737-55732840) | |
| 503-606, gnl|monDom2|scaffold_14 (49320881-49320726) | |
| 503-606, gnl|oryCun1|scaffold_106999 (4573-4397) | |
| 503-606, gnl|panTro1|chr8 (116897138-116897315) | |
| 503-606, gnl|rheMac2|chr9 (112699162-112699339) | |
| 503-606, gnl|rn3|chr1 (262317260-262317418) | |
| 503-606, gnl|tetNig1|chr2_random (318553-318382) | |
| 503-606, gnl|xenTro1|scaffold_510 (585898-585730) | |
| 608-709, gnl|bosTau2|chr26 (22409985-22410086) | |
| 608-709, gnl|canFam2|chr28 (27092164-27092361) | |
| 608-709, gnl|dasNov1|scaffold_164 (96292-96110) | |
| 608-709, gnl|echTel1|scaffold_278535 (51700-51531) | |
| 608-709, gnl|hg17|chr10 (114839032-114839227) | |
| 608-709, gnl|Hg17|chr10 (114839149-114839250) | |
| 608-709, gnl|loxAfr1|scaffold_63 (218895-218700) | |
| 608-709, gnl|mm7|chr19 (55778331-55778475) | |
| 608-709, gnl|Mm7|chr19 (55778397-55778498) | |
| 608-709, gnl|oryCun1|scaffold_199828 (126706-126900) | |
| 608-709, gnl|panTro1|chr8 (116947101-116947296) | |
| 608-709, gnl|rheMac2|chr9 (112750557-112750752) | |
| 608-709, gnl|rn3|chr1 (262365863-262366007) | |
| 712-846, gnl|bosTau2|chr26 (22496100-22496234) | |
| 712-846, gnl|canFam2|chr28 (27138815-27138978) | |
| 712-846, gnl|danRer3|chr12 (28667370-28667214) | |
| 712-846, gnl|dasNov1|scaffold_164 (49042-48877) | |
| 712-846, gnl|echTel1|scaffold_280843 (814-650) | |
| 712-846, gnl|fr1|chrUn (43244490-43244325) | |
| 712-846, gnl|galGal2|chr6 (26251232-26251406) | |
| 712-846, gnl|hg17|chr10 (114890909-114891071) | |
| 712-846, gnl|Hg17|chr10 (114890932-114891066) | |
| 712-846, gnl|loxAfr1|scaffold_69423 (4442-4279) | |
| 712-846, gnl|mm7|chr19 (55823373-55823537) | |
| 712-846, gnl|Mm7|chr19 (55823398-55823532) | |
| 712-846, gnl|monDom2|scaffold_14 (49207678-49207512) | |
| 712-846, gnl|oryCun1|scaffold_136723 (7686-7524) | |
| 712-846, gnl|panTro1|chr8 (116999166-116999328) | |
| 712-846, gnl|rheMac2|chr9 (112802511-112802673) | |
| 712-846, gnl|rn3|chr1 (262411198-262411362) | |
| 712-846, gnl|tetNig1|chr2_random (281827-281669) | |
| 712-846, gnl|xenTro1|scaffold_510 (531840-531667) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| csk (0.140746) | |
| ebs (0.118301) |