Non-Coding RNA Search

Ss1.1-Mixn-0021h11.5.5

Sequence:


               
               ACTTCCGGCCGGGCCCCTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCCGAGAGGGCGAG
AGGCCGAGGGGATCCCGCAGTGGAGTGCGAGGACCAGACGCCCCAGCGATGACCAGTTCC
CCTGTCTCCAGAGTCGTCTACAACGGCAAGAGGAACAGCAGCCCCCGCTCGCCCCCCAGC
AGCAGCGAGATTTTCACCCCGGCTCACGAGGAGAATGTGCGCTTCATTTACGAAGCCTGG
CAGGGCGTGGAGCGAGACCTGCGCAGCCAGCTGTCGGGCGGCGAGCGGGGCCTGGTGGAG
GAGTACGTGGAGAAGGTCCCTAACCCCAGCCTGAAGACCTTCAAGCCCATCGACCTGAGC
GACCTGAAGCGCCGGAACACGCAGGACACCAAGAAGTCCTAAGGCGCCGGAGCCCCCGCC
CTGGCCTCTGGGGGACCTGCACGCCCGCCGCGGCCGCCGCCTCTCCCCTGGGCCAGCTCC
TGGGAGGGGAGGGGCCTTGCTCCCCGCCGGCCGAGAAGCCCGGGACCAGGACAGGCGCGC
CGGACGGCCCAGGCCGCCCCTCCTCCCTGAGCCCCCCTCTCCCCTCGGGGGACCTCAGGC
TGCCCCCATCCTTGGGAGGGCCTGGGCCCTGCCTGCCCCCAGGGCTTGACCTGACTCCCC
TCCCCTTCCCAACACCTTCCGCTGCCCCCACCCCCCTCCCCTGGCCACTGCTAGGATCAG
GAGGGAGACGCAGGGGCCTCTGTCGTCTCCTGTGCTGGCAGGACCAGGCCGGCTTTGTCC
CCGAGGTGGCCAGGAGGCAGGACAAGGGTGGTCCCACCTGTGCCCAGCATGGGTCCCCCA
CTGACCCCTGTTGCCCCTTTGGCCTGGACACGGGGAGCATCTGACACCCCCCTCCCCCCC
GCCACTGTCCAGCCTGGCCCCTTCCCTCCCCGTGTCCGCTTCAGGATGGCACCAGCTCTC
CTGGGACACTGCCGTGCCCCCCCGCGCCTTAGGAAGGGGTGTGGGGCTGCCCACTGGGTC
CTGCCCTGTGCAGTGAGCTGGGAGGGTGTGCTGTGCCCTCCAAATCCAGGTGTCCGACTG
GAACCTGAAGGCCCGTGAATAAAGGTGGGGTGGCCTTGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCCGGCCGGGCCCCTGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCCGAGAGGGCGAG
AGGCCGAGGGGATCCCGCAGTGGAGTGCGAGGACCAGACGCCCCAGCGATGACCAGTTCC
CCTGTCTCCAGAGTCGTCTACAACGGCAAGAGGAACAGCAGCCCCCGCTCGCCCCCCAGC
AGCAGCGAGATTTTCACCCCGGCTCACGAGGAGAATGTGCGCTTCATTTACGAAGCCTGG
CAGGGCGTGGAGCGAGACCTGCGCAGCCAGCTGTCGGGCGGCGAGCGGGGCCTGGTGGAG
GAGTACGTGGAGAAGGTCCCTAACCCCAGCCTGAAGACCTTCAAGCCCATCGACCTGAGC
GACCTGAAGCGCCGGAACACGCAGGACACCAAGAAGTCCTAAGGCGCCGGAGCCCCCGCC
CTGGCCTCTGGGGGACCTGCACGCCCGCCGCGGCCGCCGCCTCTCCCCTGGGCCAGCTCC
TGGGAGGGGAGGGGCCTTGCTCCCCGCCGGCCGAGAAGCCCGGGACCAGGACAGGCGCGC
CGGACGGCCCAGGCCGCCCCTCCTCCCTGAGCCCCCCTCTCCCCTCGGGGGACCTCAGGC
TGCCCCCATCCTTGGGAGGGCCTGGGCCCTGCCTGCCCCCAGGGCTTGACCTGACTCCCC
TCCCCTTCCCAACACCTTCCGCTGCCCCCACCCCCCTCCCCTGGCCACTGCTAGGATCAG
GAGGGAGACGCAGGGGCCTCTGTCGTCTCCTGTGCTGGCAGGACCAGGCCGGCTTTGTCC
CCGAGGTGGCCAGGAGGCAGGACAAGGGTGGTCCCACCTGTGCCCAGCATGGGTCCCCCA
CTGACCCCTGTTGCCCCTTTGGCCTGGACACGGGGAGCATCTGACACCCCCCTCCCCCCC
GCCACTGTCCAGCCTGGCCCCTTCCCTCCCCGTGTCCGCTTCAGGATGGCACCAGCTCTC
CTGGGACACTGCCGTGCCCCCCCGCGCCTTAGGAAGGGGTGTGGGGCTGCCCACTGGGTC
CTGCCCTGTGCAGTGAGCTGGGAGGGTGTGCTGTGCCCTCCAAATCCAGGTGTCCGACTG
GAACCTGAAGGCCCGTGAATAAAGGTGGGGTGGCCTTGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61839333|ref|XP_589904.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839333|ref|XP_589904.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               113-235, gnl|bosTau2|chr19 (45357043-45356921)
               

               
               113-235, gnl|Hg17|chr17_random (1880383-1880260)
               

               
               113-235, gnl|Mm7|chr11 (120653848-120653722)
               


               
               338-638, gnl|bosTau2|chr19 (45356008-45355697)
               

               
               338-638, gnl|Hg17|chr17_random (1879281-1878986)
               

               
               338-638, gnl|Mm7|chr11 (120652793-120652515)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-235, gnl|bosTau2|chr19 (45357043-45356921)
               

               
               113-235, gnl|Hg17|chr17_random (1880383-1880260)
               

               
               113-235, gnl|Mm7|chr11 (120653848-120653722)
               


               
               338-638, gnl|bosTau2|chr19 (45356008-45355697)
               

               
               338-638, gnl|Hg17|chr17_random (1879281-1878986)
               

               
               338-638, gnl|Mm7|chr11 (120652793-120652515)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               fce (0.271592)
               

               
               cbr (0.255951)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fce (0.271592)
               

               
               cbr (0.255951)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

	113-235, gnl\|bosTau2\|chr19 (45357043-45356921)
	113-235, gnl\|Hg17\|chr17_random (1880383-1880260)
	113-235, gnl\|Mm7\|chr11 (120653848-120653722)

	338-638, gnl\|bosTau2\|chr19 (45356008-45355697)
	338-638, gnl\|Hg17\|chr17_random (1879281-1878986)
	338-638, gnl\|Mm7\|chr11 (120652793-120652515)

	amn (0.417711)
	fce (0.271592)
	cbr (0.255951)
	hyp (0.142837)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)