Ss1.1-Mixn-0021h13.5
|
GGAAAGGAAAATCAGCTTCAGCTTAGCTGTTTTATCAATCAGGAAGTCAAGTATCTTTTT
ACAGGACTTAAATTGCGACTTCAGGAAGAAATTACCAAACAGTCTCCAACATTGCAAAGA
AATGCTTTGTACATCAAATCTTCCAAGATTAGCCGGCTACCTGCTTACTTGACTATTCAG
ATGGTTCGATTTTTTTATAAAGAGAAGGAGTCTGTAAATGCTAAAGTTCTTAAGGATGTT
AAATTTCCTCTTATGTTGGATGTGTATGAACTGTGTACACCAGAACTTCAAGAGAAAATG
GTTTCTTTTCGATCAAAATTCAAGGATCTAGAAGATAAAAAAGTAAATCAGCAGCCAAAG
GCAAGTGACAAAAAGAGTAGTCCCCAAAAAGAAGTTAAGTATGAACCCTTTTCTTTTGCT
GATGACATTGGCTCCAATAATTGTGGATACTATGACTTACAAGCAGTGCTAACACATCAG
GGAAGGTCTAGCTCTTCAGGCCATTATGTATCGTGGGTGAAAAGGAAACAAGATGAATGG
ATTAAGTTTGATGATGATAAGGTCAGCATCGTGACACCAGAGGATATCTTGCGGCTTTCT
GGTGGTGGAGACTGGCATATAGCTTATGTTCTACTGTATGGCCCTCGCAGAGTTGAAATA
ATGGAAGAGGAAAGTGAATAGTAATCTTCATTCTAGCTATTTATGCTTAGGTGTGAAATA
AATGTTATTTGTTGATCATTTCTATAACCCAGAGCTTTAGAGAAAGATATTTAGGTGGTT
TTATGTGTTTCCCCTCATGTAGAACAAAAGAGGGTAGAAGCAGACCACTCTGTGTATCAA
CCTAAAAAATTACAGAAAAGAGAAAATTGCCTTTGGACTGTGCTGCCCTGGATAAAGGTG
GCAGGAAGACATTTTTAAAAAGCTTATTTCTTGGATTAACTTTTAAAAATCCTTGAGTTG
AAATGCCTTTCAGCTGTTACCTTCTGTGATAAATTCTCTGCCTTTTTCAGCCCAAAAGTC
AACAATCAGATGTTTATTGCACACCTATTAACCCTATTGTTTGTTGTTCTTGCATGGTTC
AGACCACCAGTGATTGAGTAGCTGCCCATCCTTTGCCTTATCTAACAAAAATGTGGCCAG
GAAGGTGGAAAGGAAGTAAGTGTTGATCTCGTTGTGTAACTCAGTGCTGCTGTCCCCAAC
CCATGGAGACATGGGTACAATCAAGTATTTGTCCAGCCTGACTGTTGCTGGCTTTTCATG
ACTTTAAAATAAATTGTGATCAATAATAGACATTTGATTATACATTTATTACTGTGTCTC
TGATGTACTATGGTTTGTACATTTAACTTTGCAATGGTTTTGTAGTAATCAACCTTAAAA
AATGTTGACAAGCTCCGGTTGCTTATTTTTAGAAAATGAGGATATTTAATAATAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAAAGGAAAATCAGCTTCAGCTTAGCTGTTTTATCAATCAGGAAGTCAAGTATCTTTTT
ACAGGACTTAAATTGCGACTTCAGGAAGAAATTACCAAACAGTCTCCAACATTGCAAAGA
AATGCTTTGTACATCAAATCTTCCAAGATTAGCCGGCTACCTGCTTACTTGACTATTCAG
ATGGTTCGATTTTTTTATAAAGAGAAGGAGTCTGTAAATGCTAAAGTTCTTAAGGATGTT
AAATTTCCTCTTATGTTGGATGTGTATGAACTGTGTACACCAGAACTTCAAGAGAAAATG
GTTTCTTTTCGATCAAAATTCAAGGATCTAGAAGATAAAAAAGTAAATCAGCAGCCAAAG
GCAAGTGACAAAAAGAGTAGTCCCCAAAAAGAAGTTAAGTATGAACCCTTTTCTTTTGCT
GATGACATTGGCTCCAATAATTGTGGATACTATGACTTACAAGCAGTGCTAACACATCAG
GGAAGGTCTAGCTCTTCAGGCCATTATGTATCGTGGGTGAAAAGGAAACAAGATGAATGG
ATTAAGTTTGATGATGATAAGGTCAGCATCGTGACACCAGAGGATATCTTGCGGCTTTCT
GGTGGTGGAGACTGGCATATAGCTTATGTTCTACTGTATGGCCCTCGCAGAGTTGAAATA
ATGGAAGAGGAAAGTGAATAGTAATCTTCATTCTAGCTATTTATGCTTAGGTGTGAAATA
AATGTTATTTGTTGATCATTTCTATAACCCAGAGCTTTAGAGAAAGATATTTAGGTGGTT
TTATGTGTTTCCCCTCATGTAGAACAAAAGAGGGTAGAAGCAGACCACTCTGTGTATCAA
CCTAAAAAATTACAGAAAAGAGAAAATTGCCTTTGGACTGTGCTGCCCTGGATAAAGGTG
GCAGGAAGACATTTTTAAAAAGCTTATTTCTTGGATTAACTTTTAAAAATCCTTGAGTTG
AAATGCCTTTCAGCTGTTACCTTCTGTGATAAATTCTCTGCCTTTTTCAGCCCAAAAGTC
AACAATCAGATGTTTATTGCACACCTATTAACCCTATTGTTTGTTGTTCTTGCATGGTTC
AGACCACCAGTGATTGAGTAGCTGCCCATCCTTTGCCTTATCTAACAAAAATGTGGCCAG
GAAGGTGGAAAGGAAGTAAGTGTTGATCTCGTTGTGTAACTCAGTGCTGCTGTCCCCAAC
CCATGGAGACATGGGTACAATCAAGTATTTGTCCAGCCTGACTGTTGCTGGCTTTTCATG
ACTTTAAAATAAATTGTGATCAATAATAGACATTTGATTATACATTTATTACTGTGTCTC
TGATGTACTATGGTTTGTACATTTAACTTTGCAATGGTTTTGTAGTAATCAACCTTAAAA
AATGTTGACAAGCTCCGGTTGCTTATTTTTAGAAAATGAGGATATTTAATAATAAAAAAA |
|
gi|48100968|ref|XP_395043.1| |
Protein identifier
|
gi|48100968|ref|XP_395043.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
233-363, gnl|bosTau2|chr24 (25573695-25573825) |
|
233-363, gnl|canFam2|chr7 (70115024-70115163) |
|
233-363, gnl|danRer3|chrNA (178463514-178463665) |
|
233-363, gnl|dasNov1|scaffold_60952 (3646-3504) |
|
233-363, gnl|echTel1|scaffold_285784 (79635-79777) |
|
233-363, gnl|fr1|chrUn (196714918-196714773) |
|
233-363, gnl|galGal2|chr2 (101358704-101358562) |
|
233-363, gnl|hg17|chr18 (194543-194685) |
|
233-363, gnl|Hg17|chr18 (194562-194692) |
|
233-363, gnl|mm7|chr18 (10207191-10207054) |
|
233-363, gnl|Mm7|chr18 (10207175-10207045) |
|
233-363, gnl|monDom2|scaffold_21 (35412323-35412177) |
|
233-363, gnl|oryCun1|scaffold_194601 (10162-10024) |
|
233-363, gnl|panTro1|chr17 (12608671-12608529) |
|
233-363, gnl|rheMac2|chr18 (13868029-13867891) |
|
233-363, gnl|rn3|chr18 (1298064-1297927) |
|
233-363, gnl|tetNig1|chr15_random (1299623-1299492) |
|
233-363, gnl|xenTro1|scaffold_549 (644612-644756) |
| |
|
531-1440, gnl|bosTau2|chr24 (25580275-25581186) |
|
531-1440, gnl|Hg17|chr18 (201131-202033) |
|
531-1440, gnl|Mm7|chr18 (10202800-10201997) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
233-363, gnl|bosTau2|chr24 (25573695-25573825) |
|
233-363, gnl|canFam2|chr7 (70115024-70115163) |
|
233-363, gnl|danRer3|chrNA (178463514-178463665) |
|
233-363, gnl|dasNov1|scaffold_60952 (3646-3504) |
|
233-363, gnl|echTel1|scaffold_285784 (79635-79777) |
|
233-363, gnl|fr1|chrUn (196714918-196714773) |
|
233-363, gnl|galGal2|chr2 (101358704-101358562) |
|
233-363, gnl|hg17|chr18 (194543-194685) |
|
233-363, gnl|Hg17|chr18 (194562-194692) |
|
233-363, gnl|mm7|chr18 (10207191-10207054) |
|
233-363, gnl|Mm7|chr18 (10207175-10207045) |
|
233-363, gnl|monDom2|scaffold_21 (35412323-35412177) |
|
233-363, gnl|oryCun1|scaffold_194601 (10162-10024) |
|
233-363, gnl|panTro1|chr17 (12608671-12608529) |
|
233-363, gnl|rheMac2|chr18 (13868029-13867891) |
|
233-363, gnl|rn3|chr18 (1298064-1297927) |
|
233-363, gnl|tetNig1|chr15_random (1299623-1299492) |
|
233-363, gnl|xenTro1|scaffold_549 (644612-644756) |
| |
|
531-1440, gnl|bosTau2|chr24 (25580275-25581186) |
|
531-1440, gnl|Hg17|chr18 (201131-202033) |
|
531-1440, gnl|Mm7|chr18 (10202800-10201997) |
|
tbr (0.925069) |
|
lin (0.291206) |
|
sug (0.254582) |
|
sin (0.174948) |
|
rec (0.17307) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cje (0.165235) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
cty (0.10408) |
|
ldo (0.0970026) |
|
tbr (0.925069) |
|
lin (0.291206) |
|
sug (0.254582) |
|
sin (0.174948) |
|
rec (0.17307) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cje (0.165235) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
cty (0.10408) |
|
ldo (0.0970026) |
