Non-Coding RNA Search

Ss1.1-Mixn-0021h16.5

Sequence:


               
               GGCTTAGGGGAGGAGGCTGGCAGTGAGGACAAGTGCCTGCTCCTGCCGCCCAGCTTCCCC
CCACCCCACCGGCAGTGCTCCAGTGAGCCCAACATCACCGACAGCCCAGATGAGCCGGAG
CAGGTGGCAGCGGGCAGCCAGGAGGACTCGGAGCTGAACTGTGCTTCCCTCAGCTGAACG
CCTGCCTCCGGAACCTCCTAGCCCAGGCCTGGCAACCAGGATGGAGGACGGCTCCGCCCC
AGGGATCACCCGGAGGCTCTTCCTCTGGGCAGTGCTGCCCTAGGGCCTCTTCAGGTACAG
GCCTAGTCTAGGTGCCGTAGGCAAACTCCCTGTCATAAGCCTCTCTCCATTTTCATGATT
CTGACCACTGCTCTGTGGCCACACAGACCCAAATGCCTAATGTCCACCTTCTGACTTTCA
GCCTCGCCTGCCTGACTCACCTCACTTCCTGCTCTCTGGGCTTTTCCCCTCAGATAGGGG
ACTCTCCCAGGCTCCCCAGTCCCAGTGCCCCTGTGTTCCCTGAGCAGGTCATCTGAGCTA
CAGGAGCCACACACAAAAACAGCAAGGAGATGTTGGCGTGTGAGGTTCCCTCTGAGGTCT
TGTGATACAGAGGCTGCTGGCCCTGTGTGGAGTGTGAGGAGACCTCAGCCCCTCCCAGGC
CTGATTCTGGGAAGGCATCATTCATTTCAGTTACAGAATTACCAAGAGTGTCCCCACTGG
TGGGTGAGGGTCTGCCCTCCTCTATATCCAGACCCTACATGCTGCCTTGGGCTTTAGCCC
AGGAGGTCATAGGGCCAGAGGATCCCCGTCTTTGATGAAGCCTCAGCATTCCCCTCTCAA
GCTTCTTCCTGACTCAAGGAACTCACCTCCCCGGTGGAGTAGCTATGCCTGCCTCCCGCT
CTGACTTCAGAAATGGATTCTTCTCCTCTTGTGGTGGAGGGGCCAGCTGATCCCCACCAA
CTAGTCTGTTCCTGGATTTGACTTGAATTTTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTAGGGGAGGAGGCTGGCAGTGAGGACAAGTGCCTGCTCCTGCCGCCCAGCTTCCCC
CCACCCCACCGGCAGTGCTCCAGTGAGCCCAACATCACCGACAGCCCAGATGAGCCGGAG
CAGGTGGCAGCGGGCAGCCAGGAGGACTCGGAGCTGAACTGTGCTTCCCTCAGCTGAACG
CCTGCCTCCGGAACCTCCTAGCCCAGGCCTGGCAACCAGGATGGAGGACGGCTCCGCCCC
AGGGATCACCCGGAGGCTCTTCCTCTGGGCAGTGCTGCCCTAGGGCCTCTTCAGGTACAG
GCCTAGTCTAGGTGCCGTAGGCAAACTCCCTGTCATAAGCCTCTCTCCATTTTCATGATT
CTGACCACTGCTCTGTGGCCACACAGACCCAAATGCCTAATGTCCACCTTCTGACTTTCA
GCCTCGCCTGCCTGACTCACCTCACTTCCTGCTCTCTGGGCTTTTCCCCTCAGATAGGGG
ACTCTCCCAGGCTCCCCAGTCCCAGTGCCCCTGTGTTCCCTGAGCAGGTCATCTGAGCTA
CAGGAGCCACACACAAAAACAGCAAGGAGATGTTGGCGTGTGAGGTTCCCTCTGAGGTCT
TGTGATACAGAGGCTGCTGGCCCTGTGTGGAGTGTGAGGAGACCTCAGCCCCTCCCAGGC
CTGATTCTGGGAAGGCATCATTCATTTCAGTTACAGAATTACCAAGAGTGTCCCCACTGG
TGGGTGAGGGTCTGCCCTCCTCTATATCCAGACCCTACATGCTGCCTTGGGCTTTAGCCC
AGGAGGTCATAGGGCCAGAGGATCCCCGTCTTTGATGAAGCCTCAGCATTCCCCTCTCAA
GCTTCTTCCTGACTCAAGGAACTCACCTCCCCGGTGGAGTAGCTATGCCTGCCTCCCGCT
CTGACTTCAGAAATGGATTCTTCTCCTCTTGTGGTGGAGGGGCCAGCTGATCCCCACCAA
CTAGTCTGTTCCTGGATTTGACTTGAATTTTTTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               702-800, + strand, RNAz p=0.956401

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               702-800, + strand, RNAz p=0.956401

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC008922, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC008922, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-620, gnl|bosTau2|chr15 (40483772-40483168)
               

               
               1-620, gnl|Hg17|chr11 (36440686-36441308)
               

               
               1-620, gnl|Mm7|chr2 (101567964-101567390)
               


               
               625-993, gnl|bosTau2|chr15 (40483126-40482770)
               

               
               625-993, gnl|Hg17|chr11 (36441349-36441753)
               

               
               625-993, gnl|Mm7|chr2 (101567366-101567018)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-620, gnl|bosTau2|chr15 (40483772-40483168)
               

               
               1-620, gnl|Hg17|chr11 (36440686-36441308)
               

               
               1-620, gnl|Mm7|chr2 (101567964-101567390)
               


               
               625-993, gnl|bosTau2|chr15 (40483126-40482770)
               

               
               625-993, gnl|Hg17|chr11 (36441349-36441753)
               

               
               625-993, gnl|Mm7|chr2 (101567366-101567018)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cga (0.279096)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	1-620, gnl\|bosTau2\|chr15 (40483772-40483168)
	1-620, gnl\|Hg17\|chr11 (36440686-36441308)
	1-620, gnl\|Mm7\|chr2 (101567964-101567390)

	625-993, gnl\|bosTau2\|chr15 (40483126-40482770)
	625-993, gnl\|Hg17\|chr11 (36441349-36441753)
	625-993, gnl\|Mm7\|chr2 (101567366-101567018)