Non-Coding RNA Search

Ss1.1-Mixn-0021i19.5

Sequence:


               
               CCTGCCCCAGAAACGGCTGGCACTTCCACACCGGGGATGCGGCGCTCTGTCCTGGTCAGG
AACCCAGGCCACAAAGGCCTGCGGCCCGCCTATAAAGAGCTTGACTCCGACTCGGAAGAC
CTAGACCCCAACTCAGAAGAGCTGGACCCAGTTTCTGGAAACCCAGAGCCTGACCCGGAA
GACCTCAACACTGTCTCTGAAGATGTGGACCCCAGCTATGAAGATCTGGAGCCTGTCTCT
GAGGATCTGGATCCTGATGTGGAAGCTCCAAGCTCCATCTCGGGCACCCGTGACTCGGAT
CCCCAAGATCTCGACCCCATGTCTTCAAGTTTCGACGACCCAGACGTCATTGGCCCTGTC
CCCTTGGTTCTCGACCCTAACAGCGACACCCTCAGCCCCTCTGCCGCCCCAGACCTGGAC
CCCCTCTCATCCGACCTTACTGCCACCCCCGAGGTCCTGGCCACCAGCCCCGCAGTGCTC
CCTGCACCTGCCAGCCCGCCCCGGCCCTTCTCCTGCCCTGATTGTGGGCGAGCCTTCCGC
CGCAGCTCGGGGCTGAGCCAGCACCGCCGCACCCACAGTGGCGAGAAGCCCTACCGCTGC
CCCGACTGCGGCAAGTCGTTCAGCCACGGCGCTACGTTGGCCCAGCACCGCGGCATCCAC
ACCGGTGCCCGGCCCTACCAGTGCGCGGCGTGCGGCAAGGCCTTTGGCTGGCGCTCCACG
CTGCTGAAGCACCGCAGCAGCCACAGCGGCGAGAAGCCGCACCACTGCCCCGTGTGCGGC
AAAGCCTTTGGCCACGGCTCGCTGCTGGCGCAGCACCTGCGTACGCACGGTGGGCCGCGG
CCGCACAAGTGCCCCGTGTGCGCCAAGGGCTTCGGGCAGGGTTCAGCGCTGCTCAAGCAC
CTACGCACACACACCGGCGAGCGGCCGTACCCCTGCCCGCAGTGCGGTAAGGCCTTCGGG
CAGAGTTCGGCTCTGCTTCAGCACCAGCGCACGCACACGGCCGAGCGCCCGTACCGCTGT
CCCCACTGCGGCAAGGCCTTCGGCCAGAGCTCCAACCTGCAGCACCACCTGCGCATCCAT
ACGGGCGAGCGGCCCTACGCCTGCCCCCACTGCTCCAAGGCTTTCGGGCAGAGCTCGGCG
CTGCTCCAGCACCTGCACGTGCATTCGGGCGAGCGCCCTTACCGCTGCCAGCTCTGTGGC
AAGGCCTTCGGCCAAGCCTCCAGCCTCACCAAGCACAAGAGGGTGCATGAAGGTGCGGCC
GCTGCAGCGGCTGCAGCTGCAGCTGCCGCTGCTGGCCTGGGCCTTAGCCCTGCTTCAATG
TTGAGGCCGGGGCAGGTCTCTCTCCTGGGTCCTGATGCTGTCTCTGTGCTTGGCTCTGGC
CTGGGCCTCAGCCCAGGCCCCAGCTCCAGCCTTGACCCTGACCCTGGCTCTGTGCTGGGC
TCCCTCCCCAAACCCAGCCCCAAACCCCTCCCTGGCTCTGGATCTACCCCCACCTCTGAT
TCTGTCAAATCTTCTGACCCTAAGCCTGGGCGCAATGCCAGCTCTGACCTTGTGGCCAAC
CCTGACCGTGGATCTGGTCCCAGCCCAGGTCCGGATCCTGTGCCCAGCCCTGACCCCAAC
TCCAAGTCCCACCCTGACCCTACCTCTCCCACCCGTGACACTGTCAGCCCAGCCCTCCCT
ACTGGCGAGAGCCCCGAGTGGGTGCAGGAGCAAGGGGCACTGCTGGGGCCTGATGGCTGA
AGGGCATGCGAGAACCCACAGGGGCCTGGGAAAGTTGTGTGTCGTGCAGTTAGTAAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCCCCAGAAACGGCTGGCACTTCCACACCGGGGATGCGGCGCTCTGTCCTGGTCAGG
AACCCAGGCCACAAAGGCCTGCGGCCCGCCTATAAAGAGCTTGACTCCGACTCGGAAGAC
CTAGACCCCAACTCAGAAGAGCTGGACCCAGTTTCTGGAAACCCAGAGCCTGACCCGGAA
GACCTCAACACTGTCTCTGAAGATGTGGACCCCAGCTATGAAGATCTGGAGCCTGTCTCT
GAGGATCTGGATCCTGATGTGGAAGCTCCAAGCTCCATCTCGGGCACCCGTGACTCGGAT
CCCCAAGATCTCGACCCCATGTCTTCAAGTTTCGACGACCCAGACGTCATTGGCCCTGTC
CCCTTGGTTCTCGACCCTAACAGCGACACCCTCAGCCCCTCTGCCGCCCCAGACCTGGAC
CCCCTCTCATCCGACCTTACTGCCACCCCCGAGGTCCTGGCCACCAGCCCCGCAGTGCTC
CCTGCACCTGCCAGCCCGCCCCGGCCCTTCTCCTGCCCTGATTGTGGGCGAGCCTTCCGC
CGCAGCTCGGGGCTGAGCCAGCACCGCCGCACCCACAGTGGCGAGAAGCCCTACCGCTGC
CCCGACTGCGGCAAGTCGTTCAGCCACGGCGCTACGTTGGCCCAGCACCGCGGCATCCAC
ACCGGTGCCCGGCCCTACCAGTGCGCGGCGTGCGGCAAGGCCTTTGGCTGGCGCTCCACG
CTGCTGAAGCACCGCAGCAGCCACAGCGGCGAGAAGCCGCACCACTGCCCCGTGTGCGGC
AAAGCCTTTGGCCACGGCTCGCTGCTGGCGCAGCACCTGCGTACGCACGGTGGGCCGCGG
CCGCACAAGTGCCCCGTGTGCGCCAAGGGCTTCGGGCAGGGTTCAGCGCTGCTCAAGCAC
CTACGCACACACACCGGCGAGCGGCCGTACCCCTGCCCGCAGTGCGGTAAGGCCTTCGGG
CAGAGTTCGGCTCTGCTTCAGCACCAGCGCACGCACACGGCCGAGCGCCCGTACCGCTGT
CCCCACTGCGGCAAGGCCTTCGGCCAGAGCTCCAACCTGCAGCACCACCTGCGCATCCAT
ACGGGCGAGCGGCCCTACGCCTGCCCCCACTGCTCCAAGGCTTTCGGGCAGAGCTCGGCG
CTGCTCCAGCACCTGCACGTGCATTCGGGCGAGCGCCCTTACCGCTGCCAGCTCTGTGGC
AAGGCCTTCGGCCAAGCCTCCAGCCTCACCAAGCACAAGAGGGTGCATGAAGGTGCGGCC
GCTGCAGCGGCTGCAGCTGCAGCTGCCGCTGCTGGCCTGGGCCTTAGCCCTGCTTCAATG
TTGAGGCCGGGGCAGGTCTCTCTCCTGGGTCCTGATGCTGTCTCTGTGCTTGGCTCTGGC
CTGGGCCTCAGCCCAGGCCCCAGCTCCAGCCTTGACCCTGACCCTGGCTCTGTGCTGGGC
TCCCTCCCCAAACCCAGCCCCAAACCCCTCCCTGGCTCTGGATCTACCCCCACCTCTGAT
TCTGTCAAATCTTCTGACCCTAAGCCTGGGCGCAATGCCAGCTCTGACCTTGTGGCCAAC
CCTGACCGTGGATCTGGTCCCAGCCCAGGTCCGGATCCTGTGCCCAGCCCTGACCCCAAC
TCCAAGTCCCACCCTGACCCTACCTCTCCCACCCGTGACACTGTCAGCCCAGCCCTCCCT
ACTGGCGAGAGCCCCGAGTGGGTGCAGGAGCAAGGGGCACTGCTGGGGCCTGATGGCTGA
AGGGCATGCGAGAACCCACAGGGGCCTGGGAAAGTTGTGTGTCGTGCAGTTAGTAAAATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61887101|ref|XP_582193.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887101|ref|XP_582193.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               160-319, - strand, RNAz p=0.996086
               

               
               557-676, - strand, RNAz p=0.6301
               

               
               837-956, - strand, RNAz p=0.588942
               

               
               997-1800, - strand, RNAz p=0.999954

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-319, - strand, RNAz p=0.996086
               

               
               557-676, - strand, RNAz p=0.6301
               

               
               837-956, - strand, RNAz p=0.588942
               

               
               997-1800, - strand, RNAz p=0.999954

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-1800, gnl|bosTau2|chr7 (12292769-12294543)
               

               
               1-1800, gnl|Hg17|chr19 (7490093-7491895)
               


               
               500-1283, gnl|bosTau2|chr14 (3061820-3061038)
               

               
               500-1283, gnl|Hg17|chr8 (146078882-146078100)
               


               
               503-1247, gnl|bosTau2|chr14 (3080504-3079760)
               

               
               503-1247, gnl|Hg17|chr8 (146127769-146127025)
               


               
               504-1094, gnl|bosTau2|chr10 (9010485-9009895)
               

               
               504-1094, gnl|Mm7|chr2 (127318487-127317897)
               


               
               514-1052, gnl|bosTau2|chr10 (8996579-8996041)
               

               
               514-1052, gnl|Hg17|chr19 (42818384-42817762)
               

               
               514-1052, gnl|Mm7|chr2 (127310010-127309556)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1800, gnl|bosTau2|chr7 (12292769-12294543)
               

               
               1-1800, gnl|Hg17|chr19 (7490093-7491895)
               


               
               500-1283, gnl|bosTau2|chr14 (3061820-3061038)
               

               
               500-1283, gnl|Hg17|chr8 (146078882-146078100)
               


               
               503-1247, gnl|bosTau2|chr14 (3080504-3079760)
               

               
               503-1247, gnl|Hg17|chr8 (146127769-146127025)
               


               
               504-1094, gnl|bosTau2|chr10 (9010485-9009895)
               

               
               504-1094, gnl|Mm7|chr2 (127318487-127317897)
               


               
               514-1052, gnl|bosTau2|chr10 (8996579-8996041)
               

               
               514-1052, gnl|Hg17|chr19 (42818384-42817762)
               

               
               514-1052, gnl|Mm7|chr2 (127310010-127309556)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               mas (0.630915)
               

               
               pla (0.267344)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.630915)
               

               
               pla (0.267344)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	160-319, - strand, RNAz p=0.996086
	557-676, - strand, RNAz p=0.6301
	837-956, - strand, RNAz p=0.588942
	997-1800, - strand, RNAz p=0.999954

	1-1800, gnl\|bosTau2\|chr7 (12292769-12294543)
	1-1800, gnl\|Hg17\|chr19 (7490093-7491895)

	500-1283, gnl\|bosTau2\|chr14 (3061820-3061038)
	500-1283, gnl\|Hg17\|chr8 (146078882-146078100)

	503-1247, gnl\|bosTau2\|chr14 (3080504-3079760)
	503-1247, gnl\|Hg17\|chr8 (146127769-146127025)

	504-1094, gnl\|bosTau2\|chr10 (9010485-9009895)
	504-1094, gnl\|Mm7\|chr2 (127318487-127317897)

	514-1052, gnl\|bosTau2\|chr10 (8996579-8996041)
	514-1052, gnl\|Hg17\|chr19 (42818384-42817762)
	514-1052, gnl\|Mm7\|chr2 (127310010-127309556)

	mas (0.630915)
	pla (0.267344)
	nlu (0.191681)
	ill (0.175593)
	mcp (0.170648)
	nje (0.16592)
	nco (0.161734)
	eli (0.151814)
	hyp (0.142837)
	pty (0.142714)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	ecc (0.115035)
	cty (0.10408)
	jej (0.0989218)