Non-Coding RNA Search

Ss1.1-Mixn-0021j10.5

Sequence:


               
               ATTTATCTTCATGTCCAGTGAGCAGTGTTGTGTCCTTCCTTGTAGCATTTGGAAATGATT
TACTGGAATTACAAAACCTATTTTTCTTTAAAATTTCAGCTTTGGCTCTGGCTGCTTTTT
AGAATAATGCAAGATAAAACCACATCTGAGGGCTAAAAATGAAGAGGGAATGGGAGACTT
GATATTTAAGCAGCTTGAATGGTTTCTTTTCTTTTCTTTATTTTTAAAGAAATGCACTTG
CCTATGATACTGTCTCTCCAGTGAAATGATTACTCCTCCATTACTCTATTGATACAATAT
TGTGCATGCTAGTGTTGTATTTCTATACAGTAGCTTGAAATTTATTAACTTATACTGTAG
GTGTTATGTATTCCTATGACAAAAAAAAATTAAGTCTTCAAATTTTTTAAAGTTTTTTTA
ATTTAATTTTTCCTTTGGGGGTAAAGTTTGCTCTACCAAATAGTGATCGTAAACAAATTG
ATCTGTTTTGGATGTTGCTATAGTGACATGCAGTTATATATTTTGTTTTTAAAGGGGGGG
GAGCAAAAGAAACACCAGTGTTAGCTTAATCTTAATGTCTGGTGTTTGTCATGGTGAAAT
TATAACTATTACAGTGTAGGAGAACAACGAATATGTTCTCTGAATGAGCCTTTGTGCTTT
TTGTCATGTTATGCAGTGAACTATTTTTAAGGTCTAATCAGTGATTATTTTTCCAACTCC
GTGTTTCTCTAAGGAATTATTTCACACACGGACCATTCTTAGCAGTTTTCCTCAGTGATG
GAATATCATGAATGTGAGTCATTATGTAGCTGTCGTACATTGAGCAAATAAACTTACAGA
TCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATCTTCATGTCCAGTGAGCAGTGTTGTGTCCTTCCTTGTAGCATTTGGAAATGATT
TACTGGAATTACAAAACCTATTTTTCTTTAAAATTTCAGCTTTGGCTCTGGCTGCTTTTT
AGAATAATGCAAGATAAAACCACATCTGAGGGCTAAAAATGAAGAGGGAATGGGAGACTT
GATATTTAAGCAGCTTGAATGGTTTCTTTTCTTTTCTTTATTTTTAAAGAAATGCACTTG
CCTATGATACTGTCTCTCCAGTGAAATGATTACTCCTCCATTACTCTATTGATACAATAT
TGTGCATGCTAGTGTTGTATTTCTATACAGTAGCTTGAAATTTATTAACTTATACTGTAG
GTGTTATGTATTCCTATGACAAAAAAAAATTAAGTCTTCAAATTTTTTAAAGTTTTTTTA
ATTTAATTTTTCCTTTGGGGGTAAAGTTTGCTCTACCAAATAGTGATCGTAAACAAATTG
ATCTGTTTTGGATGTTGCTATAGTGACATGCAGTTATATATTTTGTTTTTAAAGGGGGGG
GAGCAAAAGAAACACCAGTGTTAGCTTAATCTTAATGTCTGGTGTTTGTCATGGTGAAAT
TATAACTATTACAGTGTAGGAGAACAACGAATATGTTCTCTGAATGAGCCTTTGTGCTTT
TTGTCATGTTATGCAGTGAACTATTTTTAAGGTCTAATCAGTGATTATTTTTCCAACTCC
GTGTTTCTCTAAGGAATTATTTCACACACGGACCATTCTTAGCAGTTTTCCTCAGTGATG
GAATATCATGAATGTGAGTCATTATGTAGCTGTCGTACATTGAGCAAATAAACTTACAGA
TCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               400-510, + strand, RNAz p=0.524392

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-510, + strand, RNAz p=0.524392

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_012479, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_012479, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-858, gnl|bosTau2|chr1 (4282051-4282867)
               

               
               2-858, gnl|Hg17|chr7 (75601612-75600772)
               

               
               2-858, gnl|Mm7|chr5 (134880523-134879689)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-858, gnl|bosTau2|chr1 (4282051-4282867)
               

               
               2-858, gnl|Hg17|chr7 (75601612-75600772)
               

               
               2-858, gnl|Mm7|chr5 (134880523-134879689)

Expressed library(ies): 35 entry(ies)

More info

Expressed library(ies): 35 entry(ies)

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               nms (0.641574)
               

               
               sme (0.610874)
               

               
               fcc (0.593354)
               

               
               ebs (0.591506)
               

               
               fhi (0.508733)
               

               
               ldo (0.485013)
               

               
               tbr (0.462535)
               

               
               ece (0.45861)
               

               
               liv (0.438853)
               

               
               amn (0.417711)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.641574)
               

               
               sme (0.610874)
               

               
               fcc (0.593354)
               

               
               ebs (0.591506)
               

               
               fhi (0.508733)
               

               
               ldo (0.485013)
               

               
               tbr (0.462535)
               

               
               ece (0.45861)
               

               
               liv (0.438853)
               

               
               amn (0.417711)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	2-858, gnl\|bosTau2\|chr1 (4282051-4282867)
	2-858, gnl\|Hg17\|chr7 (75601612-75600772)
	2-858, gnl\|Mm7\|chr5 (134880523-134879689)

	nms (0.641574)
	sme (0.610874)
	fcc (0.593354)
	ebs (0.591506)
	fhi (0.508733)
	ldo (0.485013)
	tbr (0.462535)
	ece (0.45861)
	liv (0.438853)
	amn (0.417711)
	eye (0.341006)
	vin (0.332557)
	fco (0.314416)
	spl (0.286369)
	hyp (0.285673)
	nca (0.273748)
	fce (0.271592)
	ste (0.270416)
	cbe (0.239234)
	pgl (0.236967)
	ecc (0.23007)
	tes (0.207814)
	col (0.195008)
	fty (0.17584)
	fbs (0.175346)
	fat (0.147427)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	eru (0.120048)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)
	eje (0.0988338)